Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079716 | Potato | nucleus | 97.86 | 85.09 |
| VIT_19s0014g01840.t01 | Wine grape | cytosol, nucleus, plastid | 66.53 | 83.91 |
| Zm00001d044183_P001 | Maize | cytosol | 15.31 | 82.87 |
| Zm00001d037833_P001 | Maize | mitochondrion | 20.82 | 82.26 |
| Solyc06g072300.2.1 | Tomato | nucleus | 87.55 | 81.4 |
| CDY04311 | Canola | cytosol, nucleus, plastid | 77.14 | 77.14 |
| TraesCS7D01G552900.1 | Wheat | mitochondrion | 35.82 | 77.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.31 | 76.53 |
| KRH38925 | Soybean | endoplasmic reticulum | 82.04 | 75.99 |
| KRH09472 | Soybean | nucleus | 81.43 | 75.78 |
| VIT_17s0053g00680.t01 | Wine grape | nucleus | 83.88 | 75.76 |
| TraesCS7D01G553200.1 | Wheat | nucleus, plastid | 36.94 | 75.57 |
| GSMUA_Achr3P13970_001 | Banana | nucleus | 80.1 | 74.06 |
| CDY68174 | Canola | nucleus | 78.78 | 73.38 |
| CDY41831 | Canola | nucleus | 78.06 | 73.28 |
| AT1G48410.2 | Thale cress | nucleus | 78.47 | 73.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 78.88 | 72.65 |
| OQU82149 | Sorghum | nucleus | 79.18 | 72.05 |
| TraesCSU01G081900.1 | Wheat | plastid | 71.84 | 71.98 |
| GSMUA_Achr1P17950_001 | Banana | nucleus | 76.94 | 71.47 |
| Bra014136.1-P | Field mustard | nucleus | 78.67 | 71.45 |
| GSMUA_Achr3P27070_001 | Banana | nucleus | 78.16 | 71.19 |
| Os04t0566500-04 | Rice | nucleus | 79.39 | 70.66 |
| Os02t0831600-01 | Rice | extracellular | 72.86 | 70.62 |
| GSMUA_Achr1P07120_001 | Banana | cytosol | 75.82 | 70.29 |
| Os02t0672200-01 | Rice | cytosol | 77.45 | 70.15 |
| TraesCS2D01G400200.1 | Wheat | nucleus | 78.06 | 69.61 |
| Bra032254.1-P | Field mustard | nucleus | 78.88 | 69.58 |
| TraesCS6B01G466700.1 | Wheat | nucleus | 71.84 | 69.5 |
| CDY23683 | Canola | cytosol, nucleus, plastid | 76.94 | 69.43 |
| TraesCS2B01G421000.2 | Wheat | nucleus | 78.06 | 69.42 |
| GSMUA_Achr7P04100_001 | Banana | extracellular | 17.55 | 69.35 |
| Zm00001d002650_P003 | Maize | nucleus | 79.18 | 68.92 |
| Solyc09g082830.2.1 | Tomato | nucleus | 68.78 | 68.64 |
| Zm00001d026111_P014 | Maize | nucleus | 76.53 | 68.49 |
| Zm00001d025331_P002 | Maize | cytosol | 38.47 | 68.3 |
| TraesCS2A01G403100.4 | Wheat | nucleus | 77.86 | 68.12 |
| Os06t0729300-01 | Rice | nucleus | 71.94 | 67.92 |
| KXG20965 | Sorghum | nucleus | 72.24 | 67.56 |
| EES18841 | Sorghum | nucleus | 76.43 | 67.54 |
| TraesCS6D01G403900.1 | Wheat | plastid | 72.65 | 67.49 |
| Zm00001d011096_P059 | Maize | nucleus | 76.22 | 67.42 |
| Zm00001d025073_P001 | Maize | cytosol | 26.63 | 67.27 |
| TraesCS6B01G270900.1 | Wheat | nucleus | 74.29 | 67.1 |
| TraesCS6A01G254600.2 | Wheat | plastid | 74.18 | 67.0 |
| Solyc12g006790.1.1 | Tomato | nucleus | 62.76 | 65.92 |
| TraesCS6D01G235900.1 | Wheat | endoplasmic reticulum | 74.39 | 65.5 |
| Zm00001d035747_P027 | Maize | endoplasmic reticulum, plastid | 76.73 | 65.45 |
| TraesCS7D01G553000.1 | Wheat | cytosol | 68.67 | 65.28 |
| TraesCS7A01G557400.1 | Wheat | plastid | 68.57 | 65.12 |
| TraesCS7B01G482100.1 | Wheat | nucleus | 68.47 | 65.02 |
| TraesCSU01G065300.1 | Wheat | nucleus | 78.06 | 64.18 |
| TraesCS7A01G040700.5 | Wheat | endoplasmic reticulum, golgi, vacuole | 78.06 | 63.22 |
| TraesCS7D01G036100.3 | Wheat | endoplasmic reticulum, golgi | 77.96 | 63.14 |
| HORVU7Hr1G120600.3 | Barley | cytosol, nucleus | 68.47 | 63.06 |
| Zm00001d014875_P001 | Maize | nucleus | 68.57 | 62.28 |
| TraesCS3B01G027100.1 | Wheat | cytosol | 9.69 | 62.09 |
| TraesCS2A01G258200.1 | Wheat | cytosol | 42.14 | 62.01 |
| OQU86027 | Sorghum | plastid | 68.98 | 61.23 |
| HORVU7Hr1G007000.14 | Barley | nucleus | 74.69 | 60.15 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.16 | 58.55 |
| TraesCS1D01G151300.3 | Wheat | plastid | 47.65 | 55.01 |
| TraesCS5B01G116900.5 | Wheat | cytosol, mitochondrion, nucleus, plastid | 47.55 | 54.89 |
| TraesCS2A01G258100.1 | Wheat | mitochondrion | 48.67 | 54.45 |
| Os02t0169400-01 | Rice | nucleus | 47.55 | 53.2 |
| Solyc06g074730.2.1 | Tomato | nucleus | 51.33 | 49.75 |
| HORVU2Hr1G103840.1 | Barley | cytosol | 11.53 | 45.2 |
| Solyc01g096750.1.1 | Tomato | nucleus | 32.35 | 35.98 |
| Solyc01g008960.2.1 | Tomato | nucleus | 32.86 | 35.42 |
| Solyc01g010970.2.1 | Tomato | nucleus | 36.12 | 35.4 |
| Solyc06g073540.2.1 | Tomato | nucleus | 31.84 | 34.17 |
| Solyc07g049500.2.1 | Tomato | nucleus | 31.22 | 33.89 |
| Solyc06g073530.1.1 | Tomato | nucleus | 31.22 | 33.85 |
| Solyc02g069270.2.1 | Tomato | cytosol | 30.2 | 30.3 |
| Solyc02g069260.2.1 | Tomato | nucleus | 31.53 | 29.65 |
| Solyc03g111760.2.1 | Tomato | mitochondrion | 27.35 | 29.26 |
| Solyc02g069280.2.1 | Tomato | nucleus | 28.67 | 28.13 |
Protein Annotations
| MapMan:16.10.3 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | InterPro:ArgoL1 | InterPro:ArgoL2 |
| InterPro:Argonaut_Gly-rich | InterPro:Argonaute_Mid_dom | InterPro:Argonaute_N | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0031047 | InterPro:IPR003100 |
| InterPro:IPR003165 | InterPro:IPR036397 | UniProt:K4BJP3 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 |
| PFAM:PF02171 | PFAM:PF08699 | PFAM:PF12764 | PFAM:PF16486 | PFAM:PF16487 | PFAM:PF16488 |
| PFscan:PS50821 | PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF102 | InterPro:Piwi | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SMART:SM00949 | SMART:SM00950 | SMART:SM01163 | SUPFAM:SSF101690 | SUPFAM:SSF53098 |
| EnsemblPlantsGene:Solyc03g098280.2 | EnsemblPlants:Solyc03g098280.2.1 | UniParc:UPI000276877E | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:+:60629142..60635774
Molecular Weight (calculated)
109218.0 Da
IEP (calculated)
9.444
GRAVY (calculated)
-0.417
Length
980 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRRSELP GSGESSGSQE TVGGQGRGQY PPQQQQEATT QTQHQAVMTT QPITCGRPAD TSMEVGSSSE PPEMSALQVT QQFQQLAVQP EAAATHTIPP
101: VSSKSLRFPL RPGKGKFGQS CIVKANHFFA ELPDKDLHQY DVTITPEVSS RGVNRAVMAQ LVLLYQESHL GKRLPAYDGR KSLYTAGPLP FVQKEFKITL
201: TDDEDGPGGA RRDREFKVVI KFASRADLHH LGMFLEGRQA DAPQEALQVL DIVLRELPTS KYCPVGRSFY SPNLGRRQPL GEGLESWRGF YQSIRPTQMG
301: LSLNIDMSST SFIEPLLVVD FVAQLLNRDV SSRPLSDADR VKIKKALRGV KVEVTHRGNM RRKYRIANLT SQATRELTFP VDEKGTLKSV IEYFRETYGF
401: VIQHTQWPCL QVGNQQRPNY LPMEVCKIVE GQRYSKRLNE KQITALLKVT CQRPQERERD ILETVKHNAY AEDKYAKEFG IKISDKLAQV EARILPPPWL
501: KYHDNGREKD CLPQVGQWNM MNKKMVNGGT VANWICINFS RNVQDTVAHG FCSELAQMCG ISGMNFNPNP VLPPVSARPD QVERVLKTRF HDAMTKLQPL
601: SKELDLLVAI LPDNNGSLYG DLKRICETDL GVVSQCCLTK HVFKMSKQYL ANVALKINVK VGGRNTVLVD AISRRIPLVS DRPTIIFGAD VTHPHPGEDS
701: SPSIAAVVAS QDWPEITKYA GLVSAQAHRQ ELIQDLYTTR QDPVKGTVSG GMIKDLLISF RRATGQKPQR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS
801: LEPNYQPPVT FVVVQKRHHT RLFANNHRDR NAVDRSGNII PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NKFSADGLQS LTNNLCYTYA
901: RCTRSVSIVP PAYYAHLAAF RARFYMEPET SDGGSVTSGA AGRGVGAGAA GKNTRAPGAG SAVRPLPALK DNVKRVMFYC
101: VSSKSLRFPL RPGKGKFGQS CIVKANHFFA ELPDKDLHQY DVTITPEVSS RGVNRAVMAQ LVLLYQESHL GKRLPAYDGR KSLYTAGPLP FVQKEFKITL
201: TDDEDGPGGA RRDREFKVVI KFASRADLHH LGMFLEGRQA DAPQEALQVL DIVLRELPTS KYCPVGRSFY SPNLGRRQPL GEGLESWRGF YQSIRPTQMG
301: LSLNIDMSST SFIEPLLVVD FVAQLLNRDV SSRPLSDADR VKIKKALRGV KVEVTHRGNM RRKYRIANLT SQATRELTFP VDEKGTLKSV IEYFRETYGF
401: VIQHTQWPCL QVGNQQRPNY LPMEVCKIVE GQRYSKRLNE KQITALLKVT CQRPQERERD ILETVKHNAY AEDKYAKEFG IKISDKLAQV EARILPPPWL
501: KYHDNGREKD CLPQVGQWNM MNKKMVNGGT VANWICINFS RNVQDTVAHG FCSELAQMCG ISGMNFNPNP VLPPVSARPD QVERVLKTRF HDAMTKLQPL
601: SKELDLLVAI LPDNNGSLYG DLKRICETDL GVVSQCCLTK HVFKMSKQYL ANVALKINVK VGGRNTVLVD AISRRIPLVS DRPTIIFGAD VTHPHPGEDS
701: SPSIAAVVAS QDWPEITKYA GLVSAQAHRQ ELIQDLYTTR QDPVKGTVSG GMIKDLLISF RRATGQKPQR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS
801: LEPNYQPPVT FVVVQKRHHT RLFANNHRDR NAVDRSGNII PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NKFSADGLQS LTNNLCYTYA
901: RCTRSVSIVP PAYYAHLAAF RARFYMEPET SDGGSVTSGA AGRGVGAGAA GKNTRAPGAG SAVRPLPALK DNVKRVMFYC
0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC
Arabidopsis Description
AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.