Factsheet for VIT_03s0038g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0113g00500.t01	Wine grape	nucleus	92.61	92.42
KRH70802	Soybean	nucleus	79.52	77.21
KRH74941	Soybean	nucleus	79.22	77.07
GSMUA_Achr7P26400_001	Banana	cytosol	47.65	74.88
PGSC0003DMT400062439	Potato	nucleus	74.73	74.65
Solyc01g010970.2.1	Tomato	nucleus	74.53	74.6
AT1G69440.1	Thale cress	cytosol	64.84	65.56
Bra003999.1-P	Field mustard	nucleus	62.94	64.22
CDY28550	Canola	cytosol, plastid	62.54	64.14
CDY51501	Canola	nucleus	57.54	64.07
CDY07349	Canola	nucleus	62.94	64.02
TraesCS2A01G414800.1	Wheat	nucleus	58.14	62.31
Zm00001d029573_P001	Maize	cytosol	62.74	60.85
EER92100	Sorghum	cytosol	62.74	60.79
Os03t0449200-00	Rice	nucleus	62.54	59.73
HORVU0Hr1G005350.1	Barley	cytosol, golgi, mitochondrion	59.94	59.29
TraesCS2B01G434000.1	Wheat	nucleus	60.54	57.71
TraesCS2D01G412100.1	Wheat	plastid	59.94	53.72
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	30.17	38.87
VIT_11s0016g04620.t01	Wine grape	cytosol	34.67	38.34
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	34.97	36.92
VIT_05s0020g04190.t01	Wine grape	nucleus	31.87	36.33
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	30.47	35.84
VIT_10s0042g01150.t01	Wine grape	nucleus	34.57	35.34
VIT_10s0042g01200.t01	Wine grape	nucleus	34.57	34.81
VIT_17s0053g00680.t01	Wine grape	nucleus	36.56	33.73
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	34.67	33.62
VIT_06s0009g01200.t01	Wine grape	nucleus	27.17	29.79
VIT_13s0175g00140.t01	Wine grape	nucleus	25.97	29.38
VIT_12s0059g01430.t01	Wine grape	nucleus	26.77	29.13
VIT_08s0040g00070.t01	Wine grape	nucleus	26.37	28.76

Protein Annotations

EntrezGene:100242077	wikigene:100242077	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1
EMBL:AM473260	InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	ProteinID:CAN72762	ProteinID:CAN72762.1
ProteinID:CCB60908	ProteinID:CCB60908.1	UniProt:F6I1U1	EMBL:FN596515	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
EntrezGene:LOC100242077	wikigene:LOC100242077	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF9	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0001985A9C	ArrayExpress:VIT_03s0038g00830	EnsemblPlantsGene:VIT_03s0038g00830
EnsemblPlants:VIT_03s0038g00830.t01	RefSeq:XP_002268673	RefSeq:XP_002268673.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3_random:-:675654..679494

Molecular Weight (calculated)

113746.0 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.437

Length

1001 amino acids

Sequence
(BLAST)

0001: MEETEESNAN KKCTPKRSFR GRTNPHDHQL LQYSNPFRFS NQNQYQSYPA LLPLPPPIPL QLTATPPLPQ NQSCRSKTHL HKPSWKQNNP PRATSSDTQV
0101: SVLTVLPASE DTQRRASSPL RGENGRKVMG ATQALVAARR PDSGGVEGPV ISLLANHFLV QFDSLQRIFH YDVEISPNPS KEVARMIKRK LVEENSVELS
0201: GALPAFDGRK NLYSPVEFQN DRLELFISLP IPTSKSLSPS GDLQEKHRQL KLFRINIKLV SKFDGKELNS YLSKEGDDWI PLPQDYLHAL DIVLRESPTE
0301: KCLPVGRSLY SSSMGGTKDI GGGAVGLRGF FQSLRPTQQG LALNVDFSVT AFHESIGIIP YLQKRVEFLR DLSQRKTRGL TGEERKEVEK ALKNIRVFVR
0401: HRATVQRYRV HSLTEETTEN LWFEDRDGKI LRLVNYFKDH YGYDIQFRNL PCLQISRSKP CYLPMELCMI CEGQKFLGKL SDDQTARILK MGCQRPRERK
0501: AIIDGVMRGA VGPTSGSQER EFKLHVSREM TRLNGRVLQP PKLKLGEGGH VRDLIPSRHD RQWNLLDSHV FEGTCIERWA LISFGGTPDQ KSNIPRFIIQ
0601: LSQRCEQLGI LLNKNTIMSP QFEPIQLLNN VSLLESKLKK IHTAALNNLQ LLICIMERKH KGYADLKRIA ETSIGVVSQC CLYQNLGKSS SQFLANLALK
0701: INAKMGGCTV ALYNSLPSQI PRLLRPDEPV IFMGADVTHP HPLDDFSPSI AAVVGSMNWP AANKYVSRMR SQTHRQEIIQ DLGAMVGEIL DDFYQQVSKL
0801: PKRIIFFRDG VSETQFYKVL QEELQAIRVA CCRFPNYRPP ITFAVVQKRH HTRLFRNESN HPSSTGNQLL EENIPPGTVV DAVITHPREF DFYLCSHWGV
0901: KGTSRPTHYH ILWDENHFTS DEVQKLVYSL CYTFVRCTKP VSLVPPAYYA HLAAYRGRLY LERSEFTTFT SSTCALSRAA PPKTTPLPKL SENVKKLMFY
1001: C

Best Arabidopsis Sequence Match ( AT1G69440.1 )
(BLAST)

001: MEEKTHHHHH STNKHIPSSK SRTPLLHKPY HHHVQTNPPP FLLHPSSHQN LNLVASNLPS SYYYYYYCYF YSQFHNSLPP PPPPHLLPLS PPLPPLLPLP
101: PPHSMTRFHK SLPVSQVVER KQQHQQKKKI QVSNNKVSGS IAIEEAALVV AKRPDFGGQD GSVIYLLANH FLVKFDSSQR IYHYNVEISP QPSKEIARMI
201: KQKLVETDRN SFSGVVPAFD GRQNIYSPVE FQGDRLEFFV NLPIPSCKAV MNYGDLREKQ PQKKIEKLFR VNMKLVSKFD GKEQRKEGED WAPLPPEYIH
301: ALDVILRENP MEKCTSIGRS FYSSSMGGSK EIGGGAVGLR GFFQSLRHTQ QGLALNMDLS ITAFHESIGV IAYLQKRLEF LTDLPRNKGR ELSLEEKREV
401: EKALKNIRVF VCHRETVQRY RVYGLTEEIT ENIWFPDREG KYLRLMSYFK DHYGYEIQFK NLPCLQISRA RPCYLPMELC MICEGQKFLG KLSDDQAAKI
501: MKMGCQKPNE RKAIIDKVMT GSVGPSSGNQ TREFNLEVSR EMTLLKGRIL QPPKLKLDRP RNLKESKVFK GTRIERWALM SIGGSSDQKS TIPKFINELT
601: QKCEHLGVFL SKNTLSSTFF EPSHILNNIS LLESKLKEIQ RAASNNLQLI ICVMEKKHKG YGDLKRISET RIGVVTQCCL YPNITKLSSQ FVSNLALKIN
701: AKIGGSMTEL YNSIPSHIPR LLRPDEPVIF MGADVTHPHP FDDCSPSVAA VVGSINWPEA NRYVSRMRSQ THRQEIIQDL DLMVKELLDD FYKAVKKLPN
801: RIIFFRDGVS ETQFKKVLQE ELQSIKTACS KFQDYNPSIT FAVVQKRHHT RLFRCDPDHE NIPPGTVVDT VITHPKEFDF YLCSHLGVKG TSRPTHYHIL
901: WDENEFTSDE LQRLVYNLCY TFVRCTKPIS IVPPAYYAHL AAYRGRLYIE RSSESNGGSM NPSSVSRVGP PKTIPLPKLS DNVKNLMFYC

Arabidopsis Description

AGO7Protein argonaute 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C793]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.