CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025910.1-P	Field mustard	nucleus	94.3	100.0
CDY65027	Canola	nucleus	97.72	97.72
AT1G18400.1	Thale cress	nucleus	69.2	70.0
CDY45873	Canola	nucleus	44.87	59.3
CDY67050	Canola	nucleus	56.27	56.49
CDX73020	Canola	nucleus	55.89	56.11
CDX82053	Canola	cytosol	23.95	53.85
CDY47737	Canola	nucleus	51.71	51.91
GSMUA_Achr10P...	Banana	nucleus	33.46	45.6
KRH41647	Soybean	nucleus	42.97	44.84
Solyc12g036470.1.1	Tomato	nucleus	45.25	43.75
KRH60345	Soybean	nucleus	40.68	43.5
Solyc03g119390.2.1	Tomato	nucleus	44.49	43.33
KRH48495	Soybean	nucleus	44.49	43.01
KRH39174	Soybean	nucleus	44.49	42.86
PGSC0003DMT400014656	Potato	nucleus	44.49	42.39
PGSC0003DMT400013766	Potato	nucleus	43.35	41.91
GSMUA_Achr11P...	Banana	nucleus	28.14	41.81
VIT_17s0000g03580.t01	Wine grape	nucleus	41.83	41.51
KRH15645	Soybean	nucleus	39.92	41.18
KRH05373	Soybean	nucleus	39.16	39.77
CDY36107	Canola	nucleus	33.46	39.29
GSMUA_Achr1P21010_001	Banana	nucleus	39.16	38.58
CDY24404	Canola	nucleus	32.32	37.95
GSMUA_Achr6P09740_001	Banana	nucleus	32.32	36.96
GSMUA_Achr9P00560_001	Banana	nucleus	33.08	34.39
GSMUA_AchrUn_...	Banana	nucleus	32.32	31.37
CDY42693	Canola	nucleus	20.91	19.64
CDY30890	Canola	mitochondrion	13.69	18.56
CDY24785	Canola	nucleus	20.91	18.33
CDY29225	Canola	nucleus	21.29	16.18
CDY53074	Canola	nucleus	20.53	16.12
CDY25162	Canola	nucleus	20.15	15.73
CDY46300	Canola	nucleus	20.15	15.73
CDY30317	Canola	nucleus	19.77	15.71
CDY51216	Canola	nucleus	18.63	14.76
CDY20923	Canola	nucleus	17.87	13.78

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GI84	UniProt:A0A078GI84	EnsemblPlants:CDY26165
ProteinID:CDY26165	ProteinID:CDY26165.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00034819001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE9E6F	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA06g12520DBnaA06g12520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI84]

Coordinates

chrLK032186:-:53719..55237

Molecular Weight (calculated)

29734.9 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.721

Length

263 amino acids

Sequence
(BLAST)

001: MANFENLSSE FQTIAMDIYS SMTQAADLNN NNNISSNLQF QTFPPFSTCL DSLFLHHRHP QQLLDLPGKY PGSDNNLSTT STLYHSSHNN VDETKKRKAL
101: LQPLSSSENS SVSDQLNINT TETGCSRRGK RLKKKNQEEE KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDI VPGCYKSMGM ATMLDEIINY
201: VQSLQNQVEL LSMKLTAASS FYDFNSETDA VDSMQRAKAR EAVEMGRQTR DGNPVLHLSA WSL

Best Arabidopsis Sequence Match ( AT1G18400.1 )
(BLAST)

001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL

Arabidopsis Description

BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.