CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15645	Soybean	nucleus	83.4	84.71
KRH39174	Soybean	nucleus	74.52	70.7
KRH48495	Soybean	nucleus	74.13	70.59
KRH41647	Soybean	nucleus	59.85	61.51
KRH60345	Soybean	nucleus	51.35	54.06
VIT_17s0000g03580.t01	Wine grape	nucleus	44.02	43.02
GSMUA_Achr11P...	Banana	nucleus	29.34	42.94
Bra025910.1-P	Field mustard	nucleus	39.38	41.13
CDY45873	Canola	nucleus	31.27	40.7
PGSC0003DMT400014656	Potato	nucleus	42.47	39.86
CDY26165	Canola	nucleus	39.77	39.16
CDY65027	Canola	nucleus	39.77	39.16
AT1G73830.1	Thale cress	nucleus	39.0	38.7
Solyc03g119390.2.1	Tomato	nucleus	39.77	38.15
AT1G18400.1	Thale cress	nucleus	38.22	38.08
GSMUA_Achr10P...	Banana	nucleus	28.19	37.82
Solyc12g036470.1.1	Tomato	nucleus	39.0	37.13
GSMUA_Achr1P21010_001	Banana	nucleus	38.22	37.08
CDX82053	Canola	cytosol	16.6	36.75
CDY67050	Canola	nucleus	35.91	35.5
CDX73020	Canola	nucleus	35.91	35.5
Bra015960.1-P	Field mustard	nucleus	35.91	35.5
PGSC0003DMT400013766	Potato	nucleus	37.07	35.29
GSMUA_AchrUn_...	Banana	nucleus	34.75	33.21
CDY47737	Canola	nucleus	32.82	32.44
Bra008113.1-P	Field mustard	nucleus	32.82	32.44
GSMUA_Achr9P00560_001	Banana	nucleus	31.66	32.41
GSMUA_Achr6P09740_001	Banana	nucleus	24.32	27.39
KRH05195	Soybean	cytosol	9.27	26.97

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02010732	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G223100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1MX53	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH05373	ProteinID:KRH05373	ProteinID:KRH05373.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295F748	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:37641613..37643442

Molecular Weight (calculated)

29452.7 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.562

Length

259 amino acids

Sequence
(BLAST)

001: MAEFTENLQN ISSSSPFLDI DPSMELLNQF IGMNQLYVLD NSNLMPYFSC DTFLGPQEPE FPGNLEEDFP FLFHHVNHNA PPVSLPIFQA ENEIHEGNKR
101: KSMDLLETSF ANSTSAVSET GSKIKHSSGR GKRLKNNVTE EEEKAKEVVN ARARRGQATD SHNLAERVRR GKINEKLRYL QNIVPGCYKT MSMAVMLDEI
201: INYFLSLELT AASTFYDFNS EIDAFETMQR SRAYEAKELG KYKREGHGGV SLLQPTWHL

Best Arabidopsis Sequence Match ( AT1G18400.1 )
(BLAST)

001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL

Arabidopsis Description

BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.