CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45873	Canola	nucleus	57.27	33.67
CDX73020	Canola	nucleus	58.97	26.34
CDY67050	Canola	nucleus	58.97	26.34
CDY47737	Canola	nucleus	58.12	25.95
AT1G73830.1	Thale cress	nucleus	57.27	25.67
GSMUA_Achr10P...	Banana	nucleus	41.88	25.39
GSMUA_Achr11P...	Banana	nucleus	37.61	24.86
CDY26165	Canola	nucleus	53.85	23.95
CDY65027	Canola	nucleus	53.85	23.95
KRH60345	Soybean	nucleus	47.86	22.76
VIT_17s0000g03580.t01	Wine grape	nucleus	51.28	22.64
KRH41647	Soybean	nucleus	48.72	22.62
Solyc03g119390.2.1	Tomato	nucleus	52.14	22.59
CDY24404	Canola	nucleus	42.73	22.32
CDY36107	Canola	nucleus	42.73	22.32
PGSC0003DMT400014656	Potato	nucleus	50.43	21.38
Solyc12g036470.1.1	Tomato	nucleus	49.57	21.32
PGSC0003DMT400013766	Potato	nucleus	49.57	21.32
KRH48495	Soybean	nucleus	47.86	20.59
KRH39174	Soybean	nucleus	47.86	20.51
GSMUA_Achr6P09740_001	Banana	nucleus	40.17	20.43
GSMUA_Achr9P00560_001	Banana	nucleus	43.59	20.16
GSMUA_Achr1P21010_001	Banana	nucleus	43.59	19.1
KRH15645	Soybean	nucleus	37.61	17.25
KRH05373	Soybean	nucleus	36.75	16.6
CDY30890	Canola	mitochondrion	27.35	16.49
CDY42693	Canola	nucleus	38.46	16.07
GSMUA_AchrUn_...	Banana	nucleus	33.33	14.39
CDY24785	Canola	nucleus	34.19	13.33
CDY53074	Canola	nucleus	34.19	11.94
CDY29225	Canola	nucleus	35.04	11.85
CDY20923	Canola	nucleus	34.19	11.73
CDY25162	Canola	nucleus	33.33	11.57
CDY46300	Canola	nucleus	33.33	11.57
CDY30317	Canola	nucleus	32.48	11.48
CDY51216	Canola	nucleus	32.48	11.45

Protein Annotations

EnsemblPlants:CDX82053	EnsemblPlantsGene:GSBRNA2T00137061001	Gene3D:4.10.280.10	GO:A0A078D469	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	PFscan:PS50888	ProteinID:CDX82053	ProteinID:CDX82053.1	SUPFAM:SSF47459
UniParc:UPI0004EDB32B	MapMan:15.5.32	:	:	:	:

Description

BnaC02g22370D

Coordinates

chrLK031827:-:207757..208802

Molecular Weight (calculated)

13372.1 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.245

Length

117 amino acids

Sequence
(BLAST)

001: MENKCLYIYK RNYSIHNSHS PPKLSRAGST RENNKRLKCL QDIVPGCYKA MGMATILDEI INYVQSLQNQ VEFLSMKLTA ASSYYEFNSE ADAIDSMQVQ
101: IILNFCLTNN FLMINTG

Best Arabidopsis Sequence Match ( AT1G18400.2 )
(BLAST)

001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQVLEHSNNV FQFLR

Arabidopsis Description

BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.