Factsheet for GSMUA_Achr9P00560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21010_001
GSMUA_Achr6P09740_001
GSMUA_Achr9P00560_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	GSMUA_Achr10P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G73830.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21010_001	Banana	nucleus	48.62	46.07
CDX82053	Canola	cytosol	20.16	43.59
GSMUA_Achr11P...	Banana	nucleus	30.04	42.94
GSMUA_Achr10P...	Banana	nucleus	32.41	42.49
GSMUA_Achr6P09740_001	Banana	nucleus	37.55	41.3
CDY45873	Canola	nucleus	30.43	38.69
GSMUA_AchrUn_...	Banana	nucleus	40.71	38.01
KRH39174	Soybean	nucleus	39.53	36.63
KRH60345	Soybean	nucleus	35.57	36.59
KRH48495	Soybean	nucleus	39.13	36.4
Bra025910.1-P	Field mustard	nucleus	34.39	35.08
VIT_01s0011g03720.t01	Wine grape	nucleus	35.18	34.5
AT1G73830.1	Thale cress	nucleus	35.57	34.48
AT1G25330.1	Thale cress	nucleus	30.04	34.08
Bra008113.1-P	Field mustard	nucleus	35.18	33.97
CDY47737	Canola	nucleus	35.18	33.97
Bra010993.1-P	Field mustard	nucleus	30.04	33.93
KRH41647	Soybean	nucleus	33.6	33.73
CDY67050	Canola	nucleus	34.78	33.59
Bra015960.1-P	Field mustard	nucleus	34.78	33.59
VIT_17s0000g03580.t01	Wine grape	nucleus	35.18	33.58
KRH15645	Soybean	nucleus	33.6	33.33
CDX73020	Canola	nucleus	34.39	33.21
CDY65027	Canola	nucleus	34.39	33.08
CDY26165	Canola	nucleus	34.39	33.08
CDY24404	Canola	nucleus	29.25	33.04
CDY36107	Canola	nucleus	29.25	33.04
AT1G18400.1	Thale cress	nucleus	33.2	32.31
Solyc03g119390.2.1	Tomato	nucleus	34.39	32.22
GSMUA_Achr10P...	Banana	nucleus	31.62	32.0
KRH05373	Soybean	nucleus	32.41	31.66
PGSC0003DMT400013766	Potato	nucleus	33.99	31.62
PGSC0003DMT400014656	Potato	nucleus	33.99	31.16
Solyc12g036470.1.1	Tomato	nucleus	33.2	30.88
Solyc04g007300.2.1	Tomato	nucleus, plastid	30.43	26.01
GSMUA_Achr5P23700_001	Banana	nucleus	24.9	24.71
Zm00001d019127_P001	Maize	plastid	18.97	15.69

Protein Annotations

EnsemblPlants:GSMUA_Achr9P00560_001	EnsemblPlants:GSMUA_Achr9T00560_001	EnsemblPlantsGene:GSMUA_Achr9G00560_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000296993B	UniProt:M0TWB3	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G00560_001]

Coordinates

chr9:+:477587..478792

Molecular Weight (calculated)

27797.1 Da

IEP (calculated)

5.954

GRAVY (calculated)

-0.380

Length

253 amino acids

Sequence
(BLAST)

001: MGEFAPILPF VEMDPDLELM RQLAELDGCA TESPSMGLLM DYSDDYYLPH QPYFSVPFME DSSGVPAECQ KPVAEPQPVG PTEEQSHGAS KRKAIAAPDT
101: SSVNCAGLCS VTRRKKNVCK GSESGKTHKS NSKEVVHVRA RRGQATDSHS LAERVRRKKI NERMRCLQDL VPGCYKTMGM AGVLDEIINY VQSLQNQVEF
201: LSMRLSAASS FYDYGMGVEA ITTNQVNPCT EHLNCLFMCN VDRGGACSCS YAA

Best Arabidopsis Sequence Match ( AT1G18400.2 )
(BLAST)

001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQVLEHSNNV FQFLR

Arabidopsis Description

BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.