Factsheet for Solyc04g007300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g072300.2.1
Solyc03g006070.2.1
Solyc03g119390.2.1
Solyc04g007300.2.1
Solyc12g036470.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	Solyc03g119390.2.1	AT1G18400.1	21336258
AT1G25330.1	Solyc12g036470.1.1	AT1G18400.1	21336258
AT1G25330.1	Solyc04g007300.2.1	AT1G25330.1	21336258
AT1G25330.1	Solyc03g119390.2.1	AT1G73830.1	21336258
AT1G25330.1	Solyc12g036470.1.1	AT1G73830.1	21336258
AT1G25330.1	Solyc02g072300.2.1	AT4G18710.1	21336258
AT1G25330.1	Solyc03g006070.2.1	AT4G18710.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g03720.t01	Wine grape	nucleus	39.86	45.74
AT1G25330.1	Thale cress	nucleus	32.77	43.5
Bra010993.1-P	Field mustard	nucleus	32.77	43.3
GSMUA_Achr11P...	Banana	nucleus	25.68	42.94
GSMUA_Achr10P...	Banana	nucleus	27.7	42.49
CDY24404	Canola	nucleus	32.09	42.41
CDY36107	Canola	nucleus	32.09	42.41
Solyc03g119390.2.1	Tomato	nucleus	35.14	38.52
Solyc12g036470.1.1	Tomato	nucleus	33.78	36.76
GSMUA_Achr1P21010_001	Banana	nucleus	33.11	36.7
GSMUA_Achr6P09740_001	Banana	nucleus	27.03	34.78
GSMUA_AchrUn_...	Banana	nucleus	30.07	32.84
GSMUA_Achr9P00560_001	Banana	nucleus	26.01	30.43
Zm00001d019127_P001	Maize	plastid	15.54	15.03

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
GO:GO:2000488	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4BNN7	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF128	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:Solyc04g007300.2
EnsemblPlants:Solyc04g007300.2.1	UniParc:UPI00027667D8	InterPro:bHLH_dom	SEG:seg	:	:

Description

Transcription factor bHLH75 [Source:Projected from Arabidopsis thaliana (AT1G25330) UniProtKB/Swiss-Prot;Acc:A4D998]

Coordinates

chr4:-:1017255..1020092

Molecular Weight (calculated)

32926.4 Da

IEP (calculated)

6.442

GRAVY (calculated)

-0.642

Length

296 amino acids

Sequence
(BLAST)

001: MGDSSSSTPL DFHALNSTCN NNSSILMNSN MELLNSISQQ LENDQNFSSN NIHQQHGFLS LSSNDQNFSN HHQHELNIMS NFHNDHHMNN ISHDVYDPAV
101: AVAAAQFFTL GGPSYGCTSS IPESESMLNS SNNNINIPTP HPLVSGNTTS KNTSEGRKRK RNNQKEVEKP REVVHVRAKR GQATDSHSLA ERLRREKINE
201: KLRCLQELVP GCYKTMGMAV MLDVIINYVR SLQNQIDFLS MKLSAASLFY DFNSSEMDDM DSMQGTNGYA AAQGMGKNIV GEGYGGFPQF QTSWPL

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.