Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010993.1-P | Field mustard | nucleus | 83.41 | 83.04 |
| CDY36107 | Canola | nucleus | 77.58 | 77.23 |
| CDY24404 | Canola | nucleus | 76.68 | 76.34 |
| GSMUA_Achr10P... | Banana | nucleus | 35.43 | 40.93 |
| GSMUA_Achr11P... | Banana | nucleus | 30.94 | 38.98 |
| VIT_01s0011g03720.t01 | Wine grape | nucleus | 42.6 | 36.82 |
| GSMUA_Achr6P09740_001 | Banana | nucleus | 35.43 | 34.35 |
| Solyc04g007300.2.1 | Tomato | nucleus, plastid | 43.5 | 32.77 |
| AT1G18400.1 | Thale cress | nucleus | 38.12 | 32.69 |
| GSMUA_Achr1P21010_001 | Banana | nucleus | 39.01 | 32.58 |
| AT1G73830.1 | Thale cress | nucleus | 36.77 | 31.42 |
| GSMUA_Achr9P00560_001 | Banana | nucleus | 34.08 | 30.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.87 | 29.52 |
| AT4G36540.1 | Thale cress | nucleus | 21.08 | 15.46 |
| Zm00001d019127_P001 | Maize | plastid | 20.18 | 14.71 |
| AT2G18300.3 | Thale cress | nucleus | 21.97 | 13.46 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EntrezGene:839117 | UniProt:A4D998 | ProteinID:AAG28811.2 |
| ProteinID:AEE30607.1 | EMBL:AF488607 | EMBL:AK175757 | ArrayExpress:AT1G25330 | EnsemblPlantsGene:AT1G25330 | RefSeq:AT1G25330 |
| TAIR:AT1G25330 | RefSeq:AT1G25330-TAIR-G | EnsemblPlants:AT1G25330.1 | TAIR:AT1G25330.1 | EMBL:AY088885 | Unigene:At.63980 |
| EMBL:DQ446289 | EMBL:DQ652859 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | GO:GO:2000488 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_564229.1 | PFAM:PF00010 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020094 |
| PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF128 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000A4795 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
Coordinates
chr1:-:8880267..8882100
Molecular Weight (calculated)
25210.8 Da
IEP (calculated)
6.955
GRAVY (calculated)
-0.653
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.