Factsheet for AT2G18300.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024474.1-P	Field mustard	nucleus	52.75	57.31
CDY20923	Canola	nucleus	53.57	57.18
Bra037226.1-P	Field mustard	nucleus	51.65	56.8
CDY30317	Canola	nucleus	51.37	56.5
CDY29225	Canola	nucleus	53.57	56.36
CDY51216	Canola	nucleus	50.82	55.72
Bra039618.1-P	Field mustard	nucleus	51.1	55.19
CDY25162	Canola	nucleus	50.82	54.9
CDY46300	Canola	nucleus	50.82	54.9
AT4G36540.1	Thale cress	nucleus	37.91	45.39
HORVU7Hr1G043560.1	Barley	nucleus	9.62	35.71
HORVU6Hr1G016250.1	Barley	nucleus	8.24	32.61
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	10.44	30.16
AT1G73830.1	Thale cress	nucleus	17.31	24.14
AT1G18400.1	Thale cress	nucleus	16.76	23.46
AT1G25330.1	Thale cress	nucleus	13.46	21.97
Zm00001d019127_P001	Maize	plastid	16.76	19.93
HORVU6Hr1G037110.1	Barley	plastid	12.36	14.56
HORVU3Hr1G066050.1	Barley	nucleus	11.54	11.76

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:816346	ProteinID:AEC06754.1	ArrayExpress:AT2G18300
EnsemblPlantsGene:AT2G18300	RefSeq:AT2G18300	TAIR:AT2G18300	RefSeq:AT2G18300-TAIR-G	EnsemblPlants:AT2G18300.3	TAIR:AT2G18300.3
Unigene:At.21771	UniProt:F4IQH8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009653	GO:GO:0009719	GO:GO:0009725	GO:GO:0009735
GO:GO:0009826	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0043425
GO:GO:0044212	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_001189548.1
PFAM:PF00010	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0008019	PO:PO:0009006	PO:PO:0009025	PO:PO:0009046	PO:PO:0009047
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001E92CD2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]

Coordinates

chr2:-:7952404..7954739

Molecular Weight (calculated)

40877.5 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.598

Length

364 amino acids

Sequence
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLENSCGNY NKISKILLST KCTHQYVPIR RVWV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.