Factsheet for Bra039618.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024474.1-P
Bra037226.1-P
Bra039618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	Bra024474.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra037226.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra039618.1-P	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25162	Canola	nucleus	94.96	94.96
CDY46300	Canola	nucleus	94.96	94.96
Bra024474.1-P	Field mustard	nucleus	68.55	68.96
Bra037226.1-P	Field mustard	nucleus	66.47	67.67
AT2G18300.3	Thale cress	nucleus	55.19	51.1
Bra010558.1-P	Field mustard	nucleus	45.4	51.0
HORVU7Hr1G043560.1	Barley	nucleus	11.87	40.82
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	12.46	33.33
HORVU6Hr1G016250.1	Barley	nucleus	8.9	32.61
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	25.22	31.72
Bra010993.1-P	Field mustard	nucleus	15.43	23.21
Bra025910.1-P	Field mustard	nucleus	15.43	20.97
Bra008113.1-P	Field mustard	nucleus	15.73	20.23
Bra015960.1-P	Field mustard	nucleus	15.43	19.85
Zm00001d019127_P001	Maize	plastid	16.91	18.63
HORVU6Hr1G037110.1	Barley	plastid	13.65	14.89
HORVU3Hr1G066050.1	Barley	nucleus	13.06	12.32

Protein Annotations

EnsemblPlants:Bra039618.1	EnsemblPlants:Bra039618.1-P	EnsemblPlantsGene:Bra039618	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254110F	UniProt:M4FEU6	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT2G18300 (E=3e-119) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:+:1519067..1520499

Molecular Weight (calculated)

37762.9 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.534

Length

337 amino acids

Sequence
(BLAST)

001: MLESLVSLES MSLSSMDVSV LERLKWLQQQ QQQVLSTTNA SPELLQFHGT NNDELLQNTF SHFQMLGSGF GPNYSMGFGP SHEAMDGCIS RTNSCQMDQA
101: DTVGVMLKNS EENITISLKN KRKSEVKTRE EEKTEKKIKV EAETELNMKV KSNLSNTEAS SETSKQKSKA ASENQKLDYI HVRARRGQAT DRHSLAERAR
201: REKISKKMKY LQDLVPGCNK VTGRAGMLDE IINYVQSLQR QVEFLSMKLA VLNPELELAM EDLSVKQFQA YFTNLPVVVA SKPSLMVDAP LFPLDQQGSL
301: DLSVINPNQA TTIEAPSASW ETQSQSLYNT SSLGFQY

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.