Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G016250.1 | Barley | nucleus | 13.73 | 53.26 |
| HORVU3Hr1G030720.2 | Barley | cytosol, nucleus, vacuole | 18.49 | 52.38 |
| HORVU7Hr1G043560.1 | Barley | nucleus | 14.01 | 51.02 |
| HORVU6Hr1G037110.1 | Barley | plastid | 17.93 | 20.71 |
| CDY42693 | Canola | nucleus | 14.29 | 18.21 |
| Bra010558.1-P | Field mustard | nucleus | 13.17 | 15.67 |
| CDY24785 | Canola | nucleus | 12.89 | 15.33 |
| Bra017765.1-P | Field mustard | cytosol, extracellular, nucleus, plastid | 11.2 | 14.93 |
| CDY53074 | Canola | nucleus | 14.01 | 14.93 |
| AT4G36540.1 | Thale cress | nucleus | 12.32 | 14.47 |
| Bra037226.1-P | Field mustard | nucleus | 12.32 | 13.29 |
| CDY51216 | Canola | nucleus | 12.32 | 13.25 |
| Bra024474.1-P | Field mustard | nucleus | 12.32 | 13.13 |
| CDY25162 | Canola | nucleus | 12.32 | 13.06 |
| CDY46300 | Canola | nucleus | 12.32 | 13.06 |
| Bra039618.1-P | Field mustard | nucleus | 12.32 | 13.06 |
| CDY30317 | Canola | nucleus | 12.04 | 12.99 |
| CDY20923 | Canola | nucleus | 12.04 | 12.61 |
| CDY29225 | Canola | nucleus | 11.76 | 12.14 |
| AT2G18300.3 | Thale cress | nucleus | 11.76 | 11.54 |
| Zm00001d019127_P001 | Maize | plastid | 5.32 | 6.21 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G066050.1 | EnsemblPlantsGene:HORVU3Hr1G066050 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF169 | SEG:seg | UniParc:UPI000B466E5A |
| UniProt:A0A287LF26 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:503232349..503237576
Molecular Weight (calculated)
39639.9 Da
IEP (calculated)
11.652
GRAVY (calculated)
-0.761
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLSSSSSAN SSACRVSYSP DLADDHLPDA QQQQQADDPV AQVDQFLSSS SSPLLLHRSA GQGDGRRLRL RPSRGYRGAR LRRAGPQRRL LRDALRRRRR
101: RLLRDALRRR RRRRRLARRH VRRPGGRDAR LRKRRPVWAR GGGGGELAAA SREGSSVSDP AWAYGANAKK LKAPAAGAAK GKEAVATFAK MGEAMGPDSK
201: KCKIQDEMVR PKVEEEEATA SDGSADRERG RKRDKGKGSK SKQSAEDEPP RDYVHVRARR GQATDSHSLA ERVRREKITL KMKMLQDLQV YSLSPALVAL
301: LFLLIEKRVL AFFCFNAISL QALCDKKLKG KLAGKEKLIE ISAKAAAQGE KNLVLIL
101: RLLRDALRRR RRRRRLARRH VRRPGGRDAR LRKRRPVWAR GGGGGELAAA SREGSSVSDP AWAYGANAKK LKAPAAGAAK GKEAVATFAK MGEAMGPDSK
201: KCKIQDEMVR PKVEEEEATA SDGSADRERG RKRDKGKGSK SKQSAEDEPP RDYVHVRARR GQATDSHSLA ERVRREKITL KMKMLQDLQV YSLSPALVAL
301: LFLLIEKRVL AFFCFNAISL QALCDKKLKG KLAGKEKLIE ISAKAAAQGE KNLVLIL
001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQV
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQV
Arabidopsis Description
BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.