Factsheet for Zm00001d019127_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001982_P001
Zm00001d008893_P001
Zm00001d019127_P001
Zm00001d026510_P001
Zm00001d028569_P002
Zm00001d039407_P001
Zm00001d047834_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	Zm00001d019127_P001	AT1G18400.1	21336258
AT1G25330.1	Zm00001d019127_P001	AT1G25330.1	21336258
AT1G25330.1	Zm00001d019127_P001	AT1G73830.1	21336258
AT1G25330.1	Zm00001d008893_P001	AT4G18710.1	21336258
AT1G25330.1	Zm00001d039407_P001	AT4G18710.1	21336258
AT2G18300.3	Zm00001d019127_P001	AT2G18300.3	23221598
AT4G36540.1	Zm00001d019127_P001	AT2G18300.3	23221598
AT4G36540.1	Zm00001d001982_P001	AT2G43060.1	21798944
AT4G36540.1	Zm00001d026510_P001	AT2G43060.1	21798944
AT4G36540.1	Zm00001d028569_P002	AT5G59210.1	21798944
AT4G36540.1	Zm00001d047834_P004	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05195	Soybean	cytosol	14.05	48.31
GSMUA_Achr10P...	Banana	nucleus	15.36	24.35
GSMUA_Achr6P09740_001	Banana	nucleus	16.01	21.3
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	18.63	21.27
AT1G25330.1	Thale cress	nucleus	14.71	20.18
CDY30890	Canola	mitochondrion	12.75	20.1
Bra010993.1-P	Field mustard	nucleus	14.38	19.64
Bra025910.1-P	Field mustard	nucleus	15.69	19.35
GSMUA_Achr9P00560_001	Banana	nucleus	15.69	18.97
Bra010558.1-P	Field mustard	nucleus	18.3	18.67
VIT_14s0006g02850.t01	Wine grape	nucleus	15.03	18.47
VIT_01s0011g03720.t01	Wine grape	nucleus	15.36	18.22
AT4G36540.1	Thale cress	nucleus	17.97	18.09
GSMUA_Achr11P...	Banana	nucleus	10.46	18.08
Solyc12g036470.1.1	Tomato	nucleus	16.01	18.01
PGSC0003DMT400013766	Potato	nucleus	16.01	18.01
Solyc03g119390.2.1	Tomato	nucleus	15.69	17.78
VIT_17s0000g03580.t01	Wine grape	nucleus	15.36	17.74
AT1G73830.1	Thale cress	nucleus	15.03	17.62
Bra037226.1-P	Field mustard	nucleus	18.63	17.22
Bra015960.1-P	Field mustard	nucleus	14.71	17.18
Bra039618.1-P	Field mustard	nucleus	18.63	16.91
GSMUA_Achr5P23700_001	Banana	nucleus	14.05	16.86
GSMUA_Achr1P21010_001	Banana	nucleus	14.71	16.85
Bra008113.1-P	Field mustard	nucleus	14.38	16.79
AT2G18300.3	Thale cress	nucleus	19.93	16.76
AT1G18400.1	Thale cress	nucleus	14.05	16.54
GSMUA_Achr10P...	Banana	nucleus	13.4	16.4
PGSC0003DMT400014656	Potato	nucleus	14.71	16.3
Bra024474.1-P	Field mustard	nucleus	17.32	15.82
Solyc04g007300.2.1	Tomato	nucleus, plastid	15.03	15.54
GSMUA_AchrUn_...	Banana	nucleus	13.73	15.5
HORVU7Hr1G043560.1	Barley	nucleus	3.92	12.24
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	4.9	11.9
HORVU6Hr1G037110.1	Barley	plastid	5.56	5.5
HORVU6Hr1G016250.1	Barley	nucleus	1.63	5.43
HORVU3Hr1G066050.1	Barley	nucleus	6.21	5.32

Protein Annotations

EnsemblPlants:Zm00001d019127_P001	EnsemblPlants:Zm00001d019127_T001	EnsemblPlantsGene:Zm00001d019127	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF182	PFscan:PS50888	ProteinID:ONM52311.1	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000843F5FE	UniProt:A0A1D6HVQ2	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Transcription factor bHLH76

Coordinates

chr7:+:18220673..18227594

Molecular Weight (calculated)

34090.2 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.521

Length

306 amino acids

Sequence
(BLAST)

001: MGSRSGRAGA ARDGAQAQAP RRPPPRRAKV SPAPERTASA PHRSVAPISS SDVSLPTSSL DLPDVADLFA PPADNASRKR ESNRSALHDS RNKFPMLGRK
101: KISERMKLLQ DLVPECSKIT GKAVMLDEII NYVQSLQRQV EFLSTKLATV NPELGFDIEQ IISKQVKPPT RSPYLPLGVI FKYALFSHVI VKSMTYQIHY
201: WFPSILKEKS IVSLTVISAW LTEAHSDKIT PHVVSWFTRE ATQDEEFEVM YGEDDDEDKD DEDDDDYDTK TKGAAGGGRA AENDLLSASR SECCTLNIDM
301: HWLWSN

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.