Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05195 | Soybean | cytosol | 18.04 | 39.33 |
| CDX82053 | Canola | cytosol | 16.49 | 27.35 |
| CDY42693 | Canola | nucleus | 25.26 | 17.5 |
| CDY45873 | Canola | nucleus | 17.53 | 17.09 |
| CDY24785 | Canola | nucleus | 24.23 | 15.67 |
| CDX73020 | Canola | nucleus | 19.59 | 14.5 |
| CDY67050 | Canola | nucleus | 19.59 | 14.5 |
| CDY53074 | Canola | nucleus | 24.74 | 14.33 |
| CDY47737 | Canola | nucleus | 19.07 | 14.12 |
| CDY26165 | Canola | nucleus | 18.56 | 13.69 |
| CDY65027 | Canola | nucleus | 18.56 | 13.69 |
| CDY25162 | Canola | nucleus | 23.71 | 13.65 |
| CDY46300 | Canola | nucleus | 23.71 | 13.65 |
| CDY51216 | Canola | nucleus | 23.2 | 13.55 |
| CDY36107 | Canola | nucleus | 15.46 | 13.39 |
| CDY24404 | Canola | nucleus | 15.46 | 13.39 |
| CDY30317 | Canola | nucleus | 22.16 | 12.99 |
| Zm00001d019127_P001 | Maize | plastid | 20.1 | 12.75 |
| CDY29225 | Canola | nucleus | 21.65 | 12.14 |
| CDY20923 | Canola | nucleus | 20.62 | 11.73 |
Protein Annotations
| EnsemblPlants:CDY30890 | EnsemblPlantsGene:GSBRNA2T00046392001 | GO:A0A078GWM7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF182 | ProteinID:CDY30890 |
| ProteinID:CDY30890.1 | SUPFAM:SSF47459 | UniParc:UPI0004EEE2DC | UniProt:A0A078GWM7 | MapMan:15.5.32 | : |
Description
BnaC09g15160DBnaC09g15160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWM7]
Coordinates
chrLK032263:+:132529..134398
Molecular Weight (calculated)
22013.0 Da
IEP (calculated)
5.020
GRAVY (calculated)
0.117
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNRRPSRAR GVRQVSGENV GSKDGKSMTM LQDLVPGCNW ITGKTVMLDE IINYVQSLQR QVDFLSMLVL LYPQRVLNFH TTLCFFFFEV VLLGSSQEIF
101: CVLLVDVSTS SEDRNLRLLC SHAINDIQDA SVGLGLQVIT LQFKEVTEYN FITGSIEKTT VLLKIMDSQA MEPICSFREN IQMEMFEKEI RGGL
101: CVLLVDVSTS SEDRNLRLLC SHAINDIQDA SVGLGLQVIT LQFKEVTEYN FITGSIEKTT VLLKIMDSQA MEPICSFREN IQMEMFEKEI RGGL
0001: MAIVTGDRYV EKLQKFLEDE AESLLEETMI LKLNPAGLHY LHLRLDSLRE LERMLSNAPV DYLRAYVSDL GDYRALEQLR RILRILTSLK VVSTLPSPAR
0101: DPTPLSLFPF GSLKVLELRR CDLSTSPAKG LIELRHTLEK IICHNSTDAL RHVFASRIAE ITNSPEWNKL AVISCACNRL VLMDESLQLL PAAESLDLSR
0201: NKFVKVDNLR RCTKLKHLDL GFNHLRTVSY LSQVSCHLVK LVLRNNALTT LRGIENLKSL QGLDVSYNII SNFSELEFLW SLSQLKELWL EGNPVCCARW
0301: YRAHVFSYVA LPDELKLDGK QIGTREFWKR QIIVAHRQSE PASYGFYSPA REEDNEEGSC NRKKKKICRL ASIHSEAEST YVNSDHESAT CDHENKENMK
0401: FNQEADIFGL ISKVEHLKKE RSVLWLREFK EWMDRSTEDF ADVCKDSQGI NLEKKYYTKI REISRHHGGG TPRYTSGSLR ASRAKSYRKN LECNGSCVDH
0501: KAGMDYMKYV EGNETQKITD DISSISLQST DRNQKHQECV HDEMESLSVE PNDLLPTTLA KEKLAENGNM STLDITQHMT GSTYPGSPPH YQKDVLYRRH
0601: NLVEEILQLS ADSYSVASSD STSSCSEDDN YDSESEYSNH KEGRLTDLLN VNRLGKEILE CTPKGTRFLG SQPENGSTIK TLRTDESMKE TTTNFPSGLH
0701: NGKHGVNQTD RLVEKRKPIK RFVSFQKEES CITNGEISLR SDADISDSGE DVCISDNFWE NTLSRVCSSS SNRSIKFLGT DRTLGVEEYF SAKLSVSSSQ
0801: ETCRTYMNCD LILQKGSTYK QREAVLLLSS QDKLYVLLVG VTTDYEGSTL SVLCSHEIKD LQDVSVGLGL QFVRLRFLED VEYIFVTKCI KKTTELLNIT
0901: QVFDSQATEY KCSLQSLENI QVDLFEKEIC GGLKLSIFQY NVLHFQSTTR GEVSWLLRSL FVAGRRLFIC SEDFTQLSSR TAYSSSAPYF LLDSCCSISE
1001: ISEMIIETQG IVVSLKIKEK RTVDLVTWKL KWCSIENAIK FAALLKALHP NSPQWPLAVR YRR
0101: DPTPLSLFPF GSLKVLELRR CDLSTSPAKG LIELRHTLEK IICHNSTDAL RHVFASRIAE ITNSPEWNKL AVISCACNRL VLMDESLQLL PAAESLDLSR
0201: NKFVKVDNLR RCTKLKHLDL GFNHLRTVSY LSQVSCHLVK LVLRNNALTT LRGIENLKSL QGLDVSYNII SNFSELEFLW SLSQLKELWL EGNPVCCARW
0301: YRAHVFSYVA LPDELKLDGK QIGTREFWKR QIIVAHRQSE PASYGFYSPA REEDNEEGSC NRKKKKICRL ASIHSEAEST YVNSDHESAT CDHENKENMK
0401: FNQEADIFGL ISKVEHLKKE RSVLWLREFK EWMDRSTEDF ADVCKDSQGI NLEKKYYTKI REISRHHGGG TPRYTSGSLR ASRAKSYRKN LECNGSCVDH
0501: KAGMDYMKYV EGNETQKITD DISSISLQST DRNQKHQECV HDEMESLSVE PNDLLPTTLA KEKLAENGNM STLDITQHMT GSTYPGSPPH YQKDVLYRRH
0601: NLVEEILQLS ADSYSVASSD STSSCSEDDN YDSESEYSNH KEGRLTDLLN VNRLGKEILE CTPKGTRFLG SQPENGSTIK TLRTDESMKE TTTNFPSGLH
0701: NGKHGVNQTD RLVEKRKPIK RFVSFQKEES CITNGEISLR SDADISDSGE DVCISDNFWE NTLSRVCSSS SNRSIKFLGT DRTLGVEEYF SAKLSVSSSQ
0801: ETCRTYMNCD LILQKGSTYK QREAVLLLSS QDKLYVLLVG VTTDYEGSTL SVLCSHEIKD LQDVSVGLGL QFVRLRFLED VEYIFVTKCI KKTTELLNIT
0901: QVFDSQATEY KCSLQSLENI QVDLFEKEIC GGLKLSIFQY NVLHFQSTTR GEVSWLLRSL FVAGRRLFIC SEDFTQLSSR TAYSSSAPYF LLDSCCSISE
1001: ISEMIIETQG IVVSLKIKEK RTVDLVTWKL KWCSIENAIK FAALLKALHP NSPQWPLAVR YRR
Arabidopsis Description
Outer arm dynein light chain 1 protein [Source:UniProtKB/TrEMBL;Acc:F4HYH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.