CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20923
CDY25162
CDY29225
CDY30317
CDY46300
CDY51216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	CDY20923	AT2G18300.3	23221598
AT2G18300.3	CDY25162	AT2G18300.3	23221598
AT2G18300.3	CDY29225	AT2G18300.3	23221598
AT2G18300.3	CDY30317	AT2G18300.3	23221598
AT2G18300.3	CDY46300	AT2G18300.3	23221598
AT2G18300.3	CDY51216	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024474.1-P	Field mustard	nucleus	80.64	83.28
CDY20923	Canola	nucleus	80.64	81.82
CDY30317	Canola	nucleus	69.94	73.11
CDY46300	Canola	nucleus	70.23	72.11
CDY25162	Canola	nucleus	70.23	72.11
CDY51216	Canola	nucleus	67.92	70.78
AT2G18300.3	Thale cress	nucleus	56.36	53.57
CDY24785	Canola	nucleus	40.75	47.0
CDY53074	Canola	nucleus	42.77	44.18
CDY42693	Canola	nucleus	31.21	38.57
HORVU7Hr1G043560.1	Barley	nucleus	10.4	36.73
CDX82053	Canola	cytosol	11.85	35.04
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	11.27	30.95
HORVU6Hr1G016250.1	Barley	nucleus	8.09	30.43
CDY45873	Canola	nucleus	14.45	25.13
CDY67050	Canola	nucleus	18.21	24.05
CDY47737	Canola	nucleus	17.63	23.28
CDX73020	Canola	nucleus	17.63	23.28
CDY65027	Canola	nucleus	16.76	22.05
CDY30890	Canola	mitochondrion	12.14	21.65
CDY36107	Canola	nucleus	13.87	21.43
CDY26165	Canola	nucleus	16.18	21.29
CDY24404	Canola	nucleus	13.29	20.54
HORVU6Hr1G037110.1	Barley	plastid	12.43	13.92
HORVU3Hr1G066050.1	Barley	nucleus	12.14	11.76

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GRW3	UniProt:A0A078GRW3	EnsemblPlants:CDY29225
ProteinID:CDY29225	ProteinID:CDY29225.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00042151001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF12B0
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA06g25320DBnaA06g25320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRW3]

Coordinates

chrLK032233:-:378036..379937

Molecular Weight (calculated)

38816.0 Da

IEP (calculated)

5.948

GRAVY (calculated)

-0.588

Length

346 amino acids

Sequence
(BLAST)

001: MLEGLVSPEN LSLSSMDMNV LERLKWLQQQ QQQQVVSQSS DNSPELLQIL QFHESNNDEL LQSTFSHFQM LGSGFGPSPN MGFGPSHEAM DGCISRTSSF
101: QMVPVDTMGV MLKNSEENRT ISSKNKRKSE VKRREEEKTE KKIKVEAETE SNMKGKSSMS NNTEASSDTS KETSKGASEI QKLDYIHVRS RRGQATDRHS
201: LAERARREKI SKKMKYLQDI VPGCKKVTGQ AGMLDEIINY VQSLQTQVEF LSMKLAVLNS ELELAVEDLY VKQDQTLHAY FTNLPVVNAS KPSIMVDVPL
301: FPLDQQGSLD LSVINLSQTT SIEAPSASWE TQSRSLFNTS SLGFHY

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.