CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82053	Canola	cytosol	33.67	57.27
CDY47737	Canola	nucleus	71.36	54.2
CDX73020	Canola	nucleus	67.34	51.15
CDY67050	Canola	nucleus	66.83	50.76
AT1G73830.1	Thale cress	nucleus	66.33	50.57
CDY26165	Canola	nucleus	59.3	44.87
CDY65027	Canola	nucleus	58.79	44.49
GSMUA_Achr10P...	Banana	nucleus	39.7	40.93
KRH60345	Soybean	nucleus	48.24	39.02
KRH41647	Soybean	nucleus	49.25	38.89
GSMUA_Achr11P...	Banana	nucleus	33.17	37.29
CDY24404	Canola	nucleus	41.21	36.61
PGSC0003DMT400013766	Potato	nucleus	49.75	36.4
Solyc03g119390.2.1	Tomato	nucleus	49.25	36.3
CDY36107	Canola	nucleus	40.7	36.16
Solyc12g036470.1.1	Tomato	nucleus	48.74	35.66
KRH48495	Soybean	nucleus	48.74	35.66
KRH39174	Soybean	nucleus	48.74	35.53
VIT_17s0000g03580.t01	Wine grape	nucleus	47.24	35.47
PGSC0003DMT400014656	Potato	nucleus	48.74	35.14
GSMUA_Achr1P21010_001	Banana	nucleus	44.22	32.96
KRH15645	Soybean	nucleus	42.21	32.94
KRH05373	Soybean	nucleus	40.7	31.27
GSMUA_Achr6P09740_001	Banana	nucleus	35.68	30.87
GSMUA_Achr9P00560_001	Banana	nucleus	38.69	30.43
GSMUA_AchrUn_...	Banana	nucleus	36.68	26.94
CDY30890	Canola	mitochondrion	17.09	17.53
CDY42693	Canola	nucleus	23.12	16.43
CDY24785	Canola	nucleus	23.12	15.33
CDY25162	Canola	nucleus	25.63	15.13
CDY46300	Canola	nucleus	25.63	15.13
CDY30317	Canola	nucleus	24.12	14.5
CDY29225	Canola	nucleus	25.13	14.45
CDY51216	Canola	nucleus	23.62	14.16
CDY20923	Canola	nucleus	23.62	13.78
CDY53074	Canola	nucleus	23.12	13.73

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078I9P6	UniProt:A0A078I9P6	EnsemblPlants:CDY45873
ProteinID:CDY45873	ProteinID:CDY45873.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00082839001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF44C4	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaC02g22470DBnaC02g22470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9P6]

Coordinates

chrLK032639:-:147943..149182

Molecular Weight (calculated)

22074.8 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.565

Length

199 amino acids

Sequence
(BLAST)

001: MANLSSDFQT FATDDPITQL AELNNTLTPF QTIKTLMESV STSENSVSDQ TLSTSSAQVS TNGTKNSWKR SKNREEEKER VVVHVSAKRG QATDSHSLAE
101: RVRRGKINER LKCLKDIVPG CYKAMGMATM LDEIINYVHS LQNQVEFLSM KLTAASSYYD FNSEADAVDS MQKAKAREAV EMGQGRDGSS VFHSSSWTL

Best Arabidopsis Sequence Match ( AT1G73830.1 )
(BLAST)

001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L

Arabidopsis Description

BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.