Factsheet for GSMUA_AchrUn_randomP20260_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21010_001
GSMUA_Achr6P09740_001
GSMUA_Achr9P00560_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	GSMUA_Achr10P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G73830.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	38.75	59.32
GSMUA_Achr1P21010_001	Banana	nucleus	48.71	49.44
GSMUA_Achr9P00560_001	Banana	nucleus	38.01	40.71
GSMUA_Achr6P09740_001	Banana	nucleus	34.32	40.43
GSMUA_Achr10P...	Banana	nucleus	26.57	37.31
VIT_01s0011g03720.t01	Wine grape	nucleus	35.42	37.21
KRH48495	Soybean	nucleus	37.27	37.13
CDY45873	Canola	nucleus	26.94	36.68
KRH39174	Soybean	nucleus	36.9	36.63
Bra010993.1-P	Field mustard	nucleus	30.26	36.61
CDY36107	Canola	nucleus	30.26	36.61
KRH15645	Soybean	nucleus	33.95	36.08
AT1G25330.1	Thale cress	nucleus	29.52	35.87
CDY24404	Canola	nucleus	29.52	35.71
KRH05373	Soybean	nucleus	33.21	34.75
KRH60345	Soybean	nucleus	31.37	34.55
Bra025910.1-P	Field mustard	nucleus	31.0	33.87
CDX73020	Canola	nucleus	32.47	33.59
CDX82053	Canola	cytosol	14.39	33.33
KRH41647	Soybean	nucleus	31.0	33.33
CDY67050	Canola	nucleus	32.1	33.21
Bra015960.1-P	Field mustard	nucleus	32.1	33.21
VIT_17s0000g03580.t01	Wine grape	nucleus	32.1	32.83
AT1G18400.1	Thale cress	nucleus	31.37	32.69
AT1G73830.1	Thale cress	nucleus	31.37	32.57
CDY26165	Canola	nucleus	31.37	32.32
CDY65027	Canola	nucleus	30.26	31.18
Bra008113.1-P	Field mustard	nucleus	29.89	30.92
CDY47737	Canola	nucleus	29.89	30.92
Solyc04g007300.2.1	Tomato	nucleus, plastid	32.84	30.07
PGSC0003DMT400013766	Potato	nucleus	29.52	29.41
Solyc12g036470.1.1	Tomato	nucleus	29.52	29.41
Solyc03g119390.2.1	Tomato	nucleus	29.15	29.26
GSMUA_Achr10P...	Banana	nucleus	26.94	29.2
PGSC0003DMT400014656	Potato	nucleus	29.52	28.99
GSMUA_Achr5P23700_001	Banana	nucleus	22.51	23.92
Zm00001d019127_P001	Maize	plastid	15.5	13.73

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP20260_001	EnsemblPlants:GSMUA_AchrUn_randomT20260_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG20260_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF191	PFAM:PF00010	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002947FF6	UniProt:M0UAT5	MapMan:15.5.32	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20260_001]

Coordinates

chrchrUn_random:+:98369488..98371565

Molecular Weight (calculated)

30662.2 Da

IEP (calculated)

6.950

GRAVY (calculated)

-0.739

Length

271 amino acids

Sequence
(BLAST)

001: MGEFAEGFDC LVPYLRFMEM DPNLELTRQL AELNDSVTEK PSLGLTDYSS DYYLLDHPVF SVPFIDDLSS LLPVECQVPI PEPQPVTGSF AEQTHGDRKR
101: KTMTSPHARY GNYSDAFLEA GRAQAKTKKQ KNGAESGDRG QSNSREVEKP KEVVHVRARS GQATDSHSLA ERERRKKINE RMKRLQNQVP GCHKMMGMAR
201: MLDQTIHYVR SLQKQFLSME LSVASYFYDC SLGVEAPAAT EADKAQKGQE VERLRREGYG DRTSFHSSVP F

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.