Factsheet for Bra010993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008113.1-P
Bra010993.1-P
Bra012581.1-P
Bra013341.1-P
Bra015960.1-P
Bra020994.1-P
Bra025910.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	Bra025910.1-P	AT1G18400.1	21336258
AT1G25330.1	Bra010993.1-P	AT1G25330.1	21336258
AT1G25330.1	Bra008113.1-P	AT1G73830.1	21336258
AT1G25330.1	Bra015960.1-P	AT1G73830.1	21336258
AT1G25330.1	Bra012581.1-P	AT4G18710.1	21336258
AT1G25330.1	Bra013341.1-P	AT4G18710.1	21336258
AT1G25330.1	Bra020994.1-P	AT4G18710.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36107	Canola	nucleus	90.62	90.62
CDY24404	Canola	nucleus	88.39	88.39
AT1G25330.1	Thale cress	nucleus	83.04	83.41
GSMUA_Achr10P...	Banana	nucleus	35.27	40.93
GSMUA_Achr11P...	Banana	nucleus	30.8	38.98
VIT_01s0011g03720.t01	Wine grape	nucleus	44.2	38.37
Bra025910.1-P	Field mustard	nucleus	38.84	35.08
Bra008113.1-P	Field mustard	nucleus	39.73	33.97
GSMUA_Achr1P21010_001	Banana	nucleus	40.18	33.71
GSMUA_Achr6P09740_001	Banana	nucleus	33.93	33.04
Solyc04g007300.2.1	Tomato	nucleus, plastid	43.3	32.77
Bra015960.1-P	Field mustard	nucleus	37.95	32.44
GSMUA_AchrUn_...	Banana	nucleus	36.61	30.26
GSMUA_Achr9P00560_001	Banana	nucleus	33.93	30.04
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	21.43	17.91
Bra010558.1-P	Field mustard	nucleus	21.43	16.0
Bra039618.1-P	Field mustard	nucleus	23.21	15.43
Zm00001d019127_P001	Maize	plastid	19.64	14.38
Bra037226.1-P	Field mustard	nucleus	20.98	14.2
Bra024474.1-P	Field mustard	nucleus	20.54	13.73

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra010993	EnsemblPlants:Bra010993.1	EnsemblPlants:Bra010993.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	GO:GO:2000488	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4D3D9	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF128
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002545E42	InterPro:bHLH_dom	SEG:seg	:

Description

AT1G25330 (E=1e-089) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA08:+:17481898..17483422

Molecular Weight (calculated)

25511.1 Da

IEP (calculated)

5.661

GRAVY (calculated)

-0.700

Length

224 amino acids

Sequence
(BLAST)

001: MARYEPYNYN IGLNPSLPHI NQNQELINLD LPVSTTPSSF MLFSNGDLVD ARHNNSHFSP NLLHGDLGRQ DKKEESGSKR KRKRSEEEES INEDNIEKAR
101: DVVHVRAKRG QATDSHSLAE RVRREKINER LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSAASAYYD LNSLDIEPTD TFQGGNMYSA
201: EEMERILREG VGTQPPNFSS TLPF

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.