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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68863
CDX75256
CDX83601
CDX92171
CDX93081
CDX95810
CDY05010
CDY14061
CDY15046
CDY23332
CDY30950
CDY51673

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14070.1 CDX93081 AT2G05230.1 21798944
AT5G14070.1 CDY15046 AT2G05230.1 21798944
AT5G14070.1 CDX93081 AT2G05250.1 21798944
AT5G14070.1 CDY15046 AT2G05250.1 21798944
AT5G14070.1 CDX92171 AT3G17860.1 21798944
AT5G14070.1 CDX95810 AT3G17860.1 21798944
AT5G14070.1 CDX68863 AT4G32570.1 21798944
AT5G14070.1 CDX75256 AT4G32570.1 21798944
AT5G14070.1 CDX83601 AT4G32570.1 21798944
AT5G14070.1 CDY23332 AT4G32570.1 21798944
AT5G14070.1 CDY30950 AT4G32570.1 21798944
AT5G14070.1 CDY51673 AT4G32570.1 21798944
AT5G14070.1 CDY05010 AT5G06960.1 21798944
AT5G14070.1 CDY14061 AT5G06960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006236.1-P Field mustard cytosol 99.27 100.0
CDX70540 Canola cytosol 94.16 94.16
CDX85614 Canola cytosol 86.86 86.86
CDX91084 Canola cytosol 85.4 85.4
AT5G14070.1 Thale cress cytosol 86.86 85.0
CDX91918 Canola cytosol 75.18 76.87
CDX74327 Canola cytosol 76.64 76.64
CDX69609 Canola cytosol 51.09 69.31
KRG94592 Soybean plastid 59.85 62.12
KRH06898 Soybean plastid 60.58 61.94
GSMUA_Achr3P18710_001 Banana cytosol 59.85 61.65
GSMUA_AchrUn_... Banana cytosol 58.39 61.54
EES05136 Sorghum cytosol 57.66 61.24
GSMUA_Achr10P... Banana cytosol 59.85 60.74
CDY58422 Canola cytosol 73.72 60.12
CDY32430 Canola cytosol, plastid 44.53 59.8
Zm00001d016593_P001 Maize cytosol 56.2 59.23
Solyc01g009910.1.1 Tomato mitochondrion, plastid 51.82 59.17
PGSC0003DMT400013435 Potato cytosol, plastid 51.82 59.17
PGSC0003DMT400013427 Potato mitochondrion, plastid 51.82 59.17
GSMUA_Achr6P23860_001 Banana plastid 58.39 58.82
KRH70543 Soybean cytosol 56.93 58.65
Os04t0393500-01 Rice cytosol 57.66 58.52
HORVU0Hr1G003840.1 Barley extracellular 56.93 58.21
TraesCS2A01G285600.1 Wheat cytosol, extracellular 56.93 58.21
Solyc05g015910.1.1 Tomato cytosol 55.47 58.02
CDY48890 Canola cytosol, plastid 43.07 57.84
Os02t0512400-01 Rice cytosol 56.93 57.78
Solyc01g009900.2.1 Tomato cytosol, plastid 50.37 57.5
TraesCS2B01G302700.1 Wheat cytosol, extracellular 56.2 57.46
PGSC0003DMT400006076 Potato plastid 56.2 57.46
TraesCS2D01G284300.1 Wheat cytosol, extracellular 56.2 57.46
EES10652 Sorghum cytosol 56.93 56.93
Zm00001d003927_P001 Maize cytosol 56.93 56.93
CDY48891 Canola cytosol 42.34 56.86
CDY32431 Canola cytosol 42.34 56.86
CDY37292 Canola cytosol, plastid 41.61 55.88
CDY19270 Canola cytosol, plastid 41.61 55.88
KRH01571 Soybean cytosol 57.66 55.63
CDY68328 Canola cytosol 40.88 54.9
CDX70828 Canola cytosol 40.15 53.92
CDY02610 Canola cytosol 40.15 53.92
PGSC0003DMT400013430 Potato cytosol 51.09 53.85
Solyc01g009890.1.1 Tomato cytosol, plastid 51.09 53.85
CDX92597 Canola cytosol 39.42 52.94
CDX88929 Canola cytosol 39.42 52.94
CDY13904 Canola cytosol 39.42 52.94
CDY66333 Canola cytosol 38.69 51.96
CDY66332 Canola cytosol 37.23 50.0
CDY54881 Canola cytosol 35.77 49.49
VIT_01s0146g00220.t01 Wine grape cytosol 56.2 49.36
CDY09747 Canola cytosol 36.5 49.02
CDY54296 Canola cytosol 36.5 49.02
CDX90576 Canola cytosol 36.5 49.02
CDY22746 Canola cytosol 36.5 49.02
CDY53023 Canola cytosol 36.5 48.54
CDY52638 Canola cytosol 35.77 48.04
CDX95739 Canola cytosol 35.77 48.04
CDY54294 Canola cytosol 35.77 48.04
CDY29666 Canola cytosol 35.77 48.04
CDY09079 Canola cytosol 35.77 48.04
CDY23990 Canola cytosol 35.77 48.04
CDX80138 Canola cytosol 35.77 47.57
CDY09078 Canola cytosol, extracellular 35.04 47.52
CDY22745 Canola cytosol, extracellular 35.04 47.52
CDY06230 Canola cytosol 34.31 47.47
CDY09953 Canola cytosol 34.31 47.47
CDY10229 Canola cytosol 34.31 47.47
CDX97824 Canola cytosol 35.04 47.06
CDX80139 Canola cytosol 35.04 47.06
CDX84825 Canola cytosol 35.04 47.06
CDY53024 Canola cytosol 35.04 47.06
CDY10745 Canola cytosol 35.04 47.06
CDX89161 Canola cytosol 35.04 46.6
CDY55528 Canola cytosol 35.04 45.71
CDX76677 Canola cytosol 34.31 45.63
CDY11464 Canola cytosol 34.31 45.63
CDY11465 Canola cytosol 34.31 45.63
CDY69190 Canola cytosol 34.31 45.19
CDY27469 Canola cytosol 34.31 44.76
CDY11466 Canola cytosol 32.85 44.12
CDX76678 Canola cytosol 32.85 44.12
CDY68061 Canola cytosol 32.12 43.14
CDX89162 Canola cytosol 32.12 43.14
CDX89159 Canola cytosol 30.66 41.18
CDY25124 Canola cytosol 30.66 41.18
CDX93949 Canola cytosol 30.66 41.18
CDX67910 Canola cytosol 29.93 40.2
CDY18141 Canola cytosol 29.93 40.2
CDX76675 Canola cytosol 29.2 39.22
CDY32493 Canola cytosol 29.2 39.22
CDY11462 Canola cytosol 29.2 39.22
CDX89921 Canola cytosol 29.2 39.22
CDX97821 Canola mitochondrion 29.2 30.08
CDY71728 Canola cytosol 28.47 27.46
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10GO:A0A078CTW7EnsemblPlants:CDX78558ProteinID:CDX78558ProteinID:CDX78558.1
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0008150GO:GO:0009055
GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0045454EnsemblPlantsGene:GSBRNA2T00129964001InterPro:GlrX-like_pln_2
InterPro:GlutaredoxinInterPro:IPR002109PFAM:PF00462PFscan:PS51354PANTHER:PTHR10168PANTHER:PTHR10168:SF128
SUPFAM:SSF52833TIGRFAMs:TIGR02189InterPro:Thioredoxin-like_sfUniParc:UPI0004EF15C8::
Description
BnaA03g04700D
Coordinates
chrLK031815:+:1298793..1299206
Molecular Weight (calculated)
14511.9 Da
IEP (calculated)
8.345
GRAVY (calculated)
0.350
Length
137 amino acids
Sequence
(BLAST)
001: MQYRTETRGS LSSYNKVNNM GVFPSDSLVR IESMAAESAV VIFSVSTCCM CHAVKGLFRG MGVSPAVHEL DLHPYGVDIH RALLRLLGCS SGASTSPGGL
101: PVVFIGGKMV GSMERVMASH INGSLVPLLK DAGALWL
Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)
001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL
Arabidopsis Description
GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.