CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74655	Canola	peroxisome, plastid	52.38	83.14
CDY26806	Canola	cytosol, mitochondrion, peroxisome	25.64	55.12
CDY05719	Canola	cytosol	35.16	53.63
CDY72417	Canola	cytosol	14.65	52.63
CDY22142	Canola	cytosol	14.65	52.63
CDY58054	Canola	cytosol	19.78	50.47
CDY66403	Canola	cytosol, nucleus, peroxisome, plastid	50.18	45.97
CDX74431	Canola	cytosol	21.98	40.82
PGSC0003DMT400048037	Potato	cytosol	46.15	38.41
Solyc03g032000.2.1	Tomato	cytosol, extracellular	45.79	38.11
Os02t0713400-01	Rice	extracellular, plasma membrane	43.22	35.65
HORVU6Hr1G070120.1	Barley	cytosol, mitochondrion	43.22	35.65
TraesCS6A01G278000.1	Wheat	cytosol, mitochondrion	43.22	35.54
TraesCS6D01G258600.1	Wheat	extracellular, golgi, unclear	43.22	35.54
PGSC0003DMT400035477	Potato	mitochondrion	47.62	35.42
CDY41653	Canola	mitochondrion	48.35	35.29
TraesCS6B01G306300.1	Wheat	cytosol	42.86	35.24
Solyc02g082250.2.1	Tomato	mitochondrion	47.25	35.15
CDY40633	Canola	mitochondrion	46.52	34.89
EES07372	Sorghum	cytosol, mitochondrion	42.12	34.74
CDX72537	Canola	mitochondrion	45.79	34.72
CDY24812	Canola	mitochondrion	46.89	34.32
CDY30367	Canola	mitochondrion	42.49	33.82
KRH76499	Soybean	nucleus	45.79	33.78
KRH28954	Soybean	nucleus	45.79	33.6
Zm00001d017823_P001	Maize	cytosol	42.86	33.24
CDY07845	Canola	plastid	41.76	33.14
EES09948	Sorghum	mitochondrion	39.93	32.15
EER89710	Sorghum	mitochondrion	43.59	32.08
TraesCS7B01G194200.1	Wheat	golgi	43.22	31.98
Zm00001d037429_P001	Maize	mitochondrion	42.86	31.62
TraesCS7A01G225400.2	Wheat	mitochondrion	42.86	31.54
KRH07823	Soybean	mitochondrion	45.42	31.47
TraesCS7D01G229100.1	Wheat	mitochondrion	42.49	31.44
HORVU7Hr1G046890.1	Barley	plastid	42.86	30.15
Zm00001d053118_P001	Maize	cytosol	38.1	29.8
GSMUA_Achr9P27590_001	Banana	mitochondrion	37.36	28.81
CDY30366	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	52.01	27.47
CDY26807	Canola	cytosol, mitochondrion	52.38	21.63
CDY22534	Canola	plastid	28.94	15.46
CDY35405	Canola	plastid	28.94	15.46
CDX79923	Canola	mitochondrion, plastid	28.57	14.61
CDY23835	Canola	plastid	28.57	14.36
CDY26805	Canola	vacuole	5.13	9.21
CDY70273	Canola	cytosol, peroxisome	3.66	7.81
Os04t0524136-00	Rice	plastid	2.56	3.52

Protein Annotations

MapMan:10.5.2	Gene3D:3.50.50.60	GO:A0A078FJZ7	UniProt:A0A078FJZ7	EnsemblPlants:CDY13332	ProteinID:CDY13332
ProteinID:CDY13332.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00071332001	InterPro:IPR036188	PFAM:PF07992
PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573	PANTHER:PTHR42863	PANTHER:PTHR42863:SF9	InterPro:Pyr_nucl-diS_OxRdtase_2_AS
InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905	UniParc:UPI0004EF0801	SEG:seg	:	:

Description

BnaC06g14250DBnaC06g14250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJZ7]

Coordinates

chrLK032034:+:388851..390851

Molecular Weight (calculated)

30039.3 Da

IEP (calculated)

9.482

GRAVY (calculated)

-0.098

Length

273 amino acids

Sequence
(BLAST)

001: MIGSSMQISL LQDGLFVSIN NNQSGSAPIS SWRQSPRSIS PRGRSRSSRI RELCSPTPSS SPPKLFVRSG KGAGGFWNRG ISACAVCDGT ALIFRNKPLV
101: VIGGGDSAMH EVYIIHRCDT FRASKIMQQR ALSKPKIELI WNSVVVAYGD ENGKGRLGGL KVKNVVVSGD VSDLKIYGLF FAIGHEPETK FLDGQFELDE
201: DGYVVTKPGT TKTSVLLYVA VDFLLYKRIV YDLQDPPAPM PKDTNLDVIR VLVDVTIRFS YITKPESYLQ DMV

Best Arabidopsis Sequence Match ( AT2G17420.1 )
(BLAST)

001: MCWISMSQSR FIIKSLFSTA GGFLLGSALS NPPSLATAFS SSSSSSSAAA AVDMETHKTK VCIVGSGPAA HTAAIYASRA ELKPLLFEGW MANDIAPGGQ
101: LTTTTDVENF PGFPEGILGI DIVEKFRKQS ERFGTTIFTE TVNKVDFSSK PFKLFTDSRT VLADSVIIST GAVAKRLSFT GSGEGNGGFW NRGISACAVC
201: DGAAPIFRNK PLVVIGGGDS AMEEANFLTK YGSKVYIIHR RDTFRASKIM QQRALSNPKI EVIWNSAVVE AYGDENGRVL GGLKVKNVVT GDVSDLKVSG
301: LFFAIGHEPA TKFLDGQLEL DEDGYVVTKP GTTKTSVVGV FAAGDVQDKK YRQAITAAGT GCMAALDAEH YLQEIGSQEG KSD

Arabidopsis Description

NTR2Thioredoxin reductase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39242]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.