Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019906.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDY19313 | Canola | nucleus | 90.91 | 90.91 |
| AT1G10690.1 | Thale cress | nucleus | 71.82 | 71.82 |
| CDY40498 | Canola | cytosol | 50.0 | 50.0 |
| CDY67411 | Canola | cytosol | 50.0 | 50.0 |
| CDY42582 | Canola | cytosol | 46.36 | 48.11 |
| CDY50122 | Canola | nucleus | 46.36 | 48.11 |
| CDY00151 | Canola | nucleus | 40.91 | 40.54 |
| CDY20043 | Canola | cytosol | 38.18 | 40.0 |
| CDX83722 | Canola | nucleus | 40.0 | 38.94 |
| CDX83719 | Canola | cytosol | 24.55 | 27.84 |
Protein Annotations
| EnsemblPlants:CDY67838 | EnsemblPlantsGene:GSBRNA2T00066937001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | ProteinID:CDY67838 | ProteinID:CDY67838.1 |
| SEG:seg | UniParc:UPI000253EA94 | UniProt:A0A078JK04 | MapMan:13.1.1.3.2 | : | : |
Description
BnaA06g38040DBnaA06g38040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK04]
Coordinates
chrLK036561:+:2662..2994
Molecular Weight (calculated)
12128.4 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.537
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYSDKSYNQ LEVEIREATD GKKWVIAGLP PRSPLKPINS SSDVIFTETE DQDQCPTTPT AVSVRIPRVP PCPAAPKKRK PSSKCSYVAT GREFFCPPDL
101: ETVFIQRAAS
101: ETVFIQRAAS
001: MGYSGKPHHQ LDGEIRESTD GKKWVIAGIP SRSPLKQINL SPGVTVTETE EQDQCPTTPT AVSVRIPRVP PCPAAPKKRK PSLKCSYVTV TRDYFSPPDL
101: ETVFIQRASY
101: ETVFIQRASY
Arabidopsis Description
SMR8Cyclin-dependent protein kinase inhibitor SMR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.