Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039074.1-P | Field mustard | cytosol | 99.05 | 99.05 |
| CDY00151 | Canola | nucleus | 86.67 | 81.98 |
| CDX83722 | Canola | nucleus | 82.86 | 76.99 |
| CDY42582 | Canola | cytosol | 71.43 | 70.75 |
| CDY50122 | Canola | nucleus | 70.48 | 69.81 |
| AT3G27630.1 | Thale cress | cytosol | 61.9 | 65.66 |
| CDX83719 | Canola | cytosol | 50.48 | 54.64 |
| VIT_14s0066g00600.t01 | Wine grape | nucleus | 45.71 | 46.6 |
| Solyc02g067810.1.1 | Tomato | nucleus | 41.9 | 42.31 |
| Solyc02g086450.1.1 | Tomato | cytosol | 41.9 | 41.9 |
| PGSC0003DMT400032809 | Potato | nucleus | 43.81 | 41.44 |
| PGSC0003DMT400017807 | Potato | cytosol | 40.0 | 40.38 |
| KRG93247 | Soybean | nucleus | 40.95 | 39.81 |
| KRH56563 | Soybean | nucleus | 40.95 | 39.09 |
| CDY67838 | Canola | cytosol, nucleus, plastid | 40.0 | 38.18 |
| CDY19313 | Canola | nucleus | 40.0 | 38.18 |
| CDY67411 | Canola | cytosol | 34.29 | 32.73 |
| CDY40498 | Canola | cytosol | 33.33 | 31.82 |
Protein Annotations
| EnsemblPlants:CDY20043 | EnsemblPlantsGene:GSBRNA2T00009881001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | ProteinID:CDY20043 | ProteinID:CDY20043.1 |
| SEG:seg | UniParc:UPI0004EDBD4B | UniProt:A0A078G5Y3 | MapMan:13.1.1.3.2 | : | : |
Description
BnaA09g02080DBnaA09g02080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5Y3]
Coordinates
chrLK032102:+:601626..601943
Molecular Weight (calculated)
11756.2 Da
IEP (calculated)
10.248
GRAVY (calculated)
-0.808
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSKKSQVG KGLDTAGEQW VIAEISIRAS LKPVKTKLRK PERETEAEDE GYCITPTAKR DKASEKLKCP PAPRKRRPAL KCRSNVGIEY FVPPEDLETV
101: FIRRG
101: FIRRG
001: MGFSKKSQFE GGLESDGKKW VIAGISIRAS LKPVKTKLRA PPEIVTEVEE DCYNEEEECS TTPTAKETKI PELLECPPAP RKRRPALKCR SNVVREFFTP
101: PSDLETVFLR RR
101: PSDLETVFLR RR
Arabidopsis Description
SMR6Cyclin-dependent protein kinase inhibitor SMR6 [Source:UniProtKB/Swiss-Prot;Acc:Q29Q81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.