Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027129.1-P | Field mustard | cytosol | 88.18 | 88.18 |
| CDY40498 | Canola | cytosol | 80.0 | 80.0 |
| AT1G60783.1 | Thale cress | nucleus | 55.45 | 57.55 |
| CDY19313 | Canola | nucleus | 51.82 | 51.82 |
| CDY67838 | Canola | cytosol, nucleus, plastid | 50.0 | 50.0 |
| CDY42582 | Canola | cytosol | 36.36 | 37.74 |
| CDY50122 | Canola | nucleus | 36.36 | 37.74 |
| CDY20043 | Canola | cytosol | 32.73 | 34.29 |
| CDY00151 | Canola | nucleus | 32.73 | 32.43 |
| CDX83722 | Canola | nucleus | 32.73 | 31.86 |
| CDX83719 | Canola | cytosol | 20.0 | 22.68 |
Protein Annotations
| EnsemblPlants:CDY67411 | EnsemblPlantsGene:GSBRNA2T00063512001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF2 | ProteinID:CDY67411 | ProteinID:CDY67411.1 |
| SEG:seg | UniParc:UPI0004EF4B59 | UniProt:A0A078JNW6 | MapMan:13.1.1.3.2 | : | : |
Description
BnaA09g53270DBnaA09g53270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNW6]
Coordinates
chrLK036080:+:2573..2905
Molecular Weight (calculated)
12204.5 Da
IEP (calculated)
9.172
GRAVY (calculated)
-0.547
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSGKTHHQ FNIELHETSE KWAIPGISLR EPMKPISLSS TTVAYTEGDV HQDQWPTTPT APSFRIPTVF PCPPPPKKRK ASSKFGYSGA REFFSPPDLE
101: TVFIHKATAP
101: TVFIHKATAP
001: MGFSGKTYHQ FDRKFSETTE GKKCVITGIS LHSTVKPISL SSSAVSNTED EDLCPTTPTA DSVRIPTVIP CPPAPKKRKL TLKVSYGPRE FFSPPDLETV
101: FIYRTT
101: FIYRTT
Arabidopsis Description
SMR15Cyclin-dependent protein kinase inhibitor SMR15 [Source:UniProtKB/Swiss-Prot;Acc:Q1G3Y4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.