CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004566.1-P	Field mustard	cytosol	67.3	70.39
PGSC0003DMT400029970	Potato	cytosol	23.27	56.92
AT1G14620.1	Thale cress	mitochondrion	65.41	44.64
CDX83379	Canola	mitochondrion	66.04	43.93
CDX95682	Canola	mitochondrion	65.41	43.51
CDY37090	Canola	mitochondrion	66.04	39.47
Solyc04g009140.2.1	Tomato	cytosol	49.69	34.96
PGSC0003DMT400082454	Potato	mitochondrion	49.06	34.06
PGSC0003DMT400081319	Potato	mitochondrion	49.06	34.06
Solyc09g075370.2.1	Tomato	mitochondrion	48.43	33.62
KRH06571	Soybean	mitochondrion	47.8	33.33
VIT_15s0046g02140.t01	Wine grape	mitochondrion	48.43	33.19
KRH11491	Soybean	mitochondrion	47.8	33.04
KRH36505	Soybean	mitochondrion	47.17	32.89
Os06t0300600-01	Rice	cytosol, mitochondrion	47.17	30.24
GSMUA_Achr3P10850_001	Banana	mitochondrion	44.65	30.21
EER97653	Sorghum	mitochondrion	44.65	29.96
Zm00001d045819_P001	Maize	mitochondrion	44.65	29.1
EER89645	Sorghum	mitochondrion	44.65	28.86
TraesCS7A01G220600.2	Wheat	mitochondrion	43.4	28.05
PGSC0003DMT400029968	Potato	mitochondrion	0.0	0.0
HORVU7Hr1G095440.1	Barley	extracellular, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:CDY42008	EnsemblPlantsGene:GSBRNA2T00074018001	Gene3D:3.90.79.10	PANTHER:PTHR13124	ProteinID:CDY42008	ProteinID:CDY42008.1
UniParc:UPI0004EF395C	UniProt:A0A078HZ62	MapMan:35.2	:	:	:

Description

BnaC04g00860DBnaC04g00860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ62]

Coordinates

chrLK032512:+:42524..44288

Molecular Weight (calculated)

18498.4 Da

IEP (calculated)

8.323

GRAVY (calculated)

-0.116

Length

159 amino acids

Sequence
(BLAST)

001: MCLINQVKKI FEWKKMSLYR ALDKKLYLLI FGKPFGATSD KTVWHFFEKN ASQGCVESAL KFLGDLTHTY FVGNAPMAHM VIQATEEITS QTDTYHLNRL
101: HLQETPDLPS YKRFFFRCTV VAASKYKISN CEDFMWVTKG ELLAFFPEHA EFFNNTIIS

Best Arabidopsis Sequence Match ( AT1G14620.1 )
(BLAST)

001: MPRSSLRLLA KPLLESRRGF CTSSDKIVAS VLFERLRVVI PKPDPAVYAF QEFKFNWQQQ FRRRYPDEFL DIAKNRAKGE YQMDYVPAPR ITEADKNNDR
101: KSLYRALDKK LYLLIFGKPF GATSDKPVWH FPEKVYDSEP TLRKCAESAL KSVVGDLTHT YFVGNAPMAH MAIQPTEEMP DLPSYKRFFF KCSVVAASKY
201: DISNCEDFVW VTKDELLEFF PEQAEFFNKM IIS

Arabidopsis Description

DECOYAt1g14620/T5E21_15 [Source:UniProtKB/TrEMBL;Acc:Q8L7U3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.