CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH04631
KRH28480
KRH50258
KRH57804
KRH71159
KRH76992

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	KRG92238	AT2G32710.1	18948957
AT3G54650.1	KRH04631	AT3G19150.1	18948957
AT3G54650.1	KRH28480	AT3G19150.1	18948957
AT3G54650.1	KRH50258	AT3G19150.1	18948957
AT3G54650.1	KRH57804	AT3G19150.1	18948957
AT3G54650.1	KRH71159	AT3G19150.1	18948957
AT3G54650.1	KRH76992	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71335	Soybean	nucleus	88.51	88.81
KRH67292	Soybean	cytosol	62.67	69.61
KRG95622	Soybean	nucleus, plastid	68.24	67.33
VIT_07s0141g00330.t01	Wine grape	plastid	63.68	65.68
Solyc09g065880.2.1	Tomato	nucleus	60.81	60.81
PGSC0003DMT400049672	Potato	nucleus	60.81	60.5
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	59.63	59.73
CDX78253	Canola	plastid	56.59	59.71
CDX73462	Canola	plastid	56.42	59.64
PGSC0003DMT400051898	Potato	cytosol	59.12	59.32
Bra007086.1-P	Field mustard	plastid	56.59	57.76
Os03t0633400-01	Rice	extracellular, vacuole	32.77	57.74
CDY55831	Canola	mitochondrion	48.14	57.46
CDY64339	Canola	plastid	54.73	57.24
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	44.93	56.72
AT3G54650.1	Thale cress	plastid	56.76	56.66
GSMUA_Achr4P21010_001	Banana	mitochondrion	46.45	56.24
GSMUA_Achr2P12640_001	Banana	plastid	53.04	55.87
Os12t0601000-00	Rice	plastid	48.14	50.89
TraesCS5B01G382000.4	Wheat	plastid	44.43	50.1
TraesCS5D01G388400.1	Wheat	plastid	47.47	50.09
TraesCS5A01G378400.1	Wheat	plastid	47.64	49.82
Zm00001d030990_P001	Maize	cytosol	48.65	48.48
EER93780	Sorghum	plastid	48.48	48.32
Zm00001d033321_P001	Maize	plastid	45.95	47.14
Zm00001d041414_P002	Maize	cytosol	47.64	47.0
KRG90050	Soybean	cytosol	4.56	46.55
TraesCS5B01G058300.1	Wheat	plastid	46.62	46.23
TraesCS5D01G069500.1	Wheat	plastid	46.45	46.14
TraesCS5A01G058400.2	Wheat	plastid	45.78	45.32
OQU79521	Sorghum	plastid	46.28	44.34
Bra014802.1-P	Field mustard	plastid	54.73	41.38
HORVU5Hr1G093590.1	Barley	extracellular	40.37	40.78
HORVU5Hr1G014320.7	Barley	plastid	46.28	40.12
HORVU5Hr1G093570.1	Barley	plastid	11.15	39.76
Os03t0633100-00	Rice	plastid	11.99	34.47

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100815170	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02006095	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G032000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1L898
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH32101	ProteinID:KRH32101	ProteinID:KRH32101.1	InterPro:LRR_dom_sf
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000233C7FE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:2791868..2797166

Molecular Weight (calculated)

64484.8 Da

IEP (calculated)

6.759

GRAVY (calculated)

-0.102

Length

592 amino acids

Sequence
(BLAST)

001: MDHSHIVAAL SAPHGGDASD AAKRGKKRGS YNCGRCGLPK KGHNCTVKTP ASTAAATPDS SLSIVSLPSS SAVPSLRQSP SNLGRALSFD DFDEPALVVD
101: RYEPDEKVDS DVFDETNPDL DLDADAGGLP ASLMWEVMRR LPPPGLLSAA KVCKGWRDTT KRLWRAVEEL KIRVPANVPV RFVASMLQKC PGIVRLSLRM
201: ESDFDSTMLA CIAFSCPNLE CMKILTFDAA IIRINGDELG RFVADKKSLK SLKMEGCSNL GGFVLCSSSL STLWLSDLHS LSKMVFNCPQ LREISLEFSC
301: LENDSTDLKT MIEGLGRSCP RLQNIHIASI RLSHSAVLAL TAAQLRGLRM LSLVLGSEIT DASVAAIASS YPNLELLDLS GSGVSDSGIS MICNVFPDTL
401: TRLLLALCPN VTSSGIQFAT FQLPHLEIMD CGMTICDPNT ENPTADENNC NLQKTSGVNV HLINQKLIIK HSRLKKLSLW GCTGLDALYL NCPRLIDLNL
501: NSCSNLHPGR LLLQCPNLEN VHASGCQDML IGAIQSQVHD ASAEMENHSQ SKRLPDGSKR IRVPHLLSEE EFPEPEKKRR KIERQLCNVL LD

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.