CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH04631
KRH28480
KRH50258
KRH57804
KRH71159
KRH76992

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	KRG92238	AT2G32710.1	18948957
AT3G54650.1	KRH04631	AT3G19150.1	18948957
AT3G54650.1	KRH28480	AT3G19150.1	18948957
AT3G54650.1	KRH50258	AT3G19150.1	18948957
AT3G54650.1	KRH57804	AT3G19150.1	18948957
AT3G54650.1	KRH71159	AT3G19150.1	18948957
AT3G54650.1	KRH76992	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95622	Soybean	nucleus, plastid	87.24	77.5
KRG90050	Soybean	cytosol	6.94	63.79
KRH71335	Soybean	nucleus	69.79	63.05
KRH32101	Soybean	nucleus	69.61	62.67
VIT_07s0141g00330.t01	Wine grape	plastid	64.54	59.93
Solyc09g065880.2.1	Tomato	nucleus	63.41	57.09
PGSC0003DMT400049672	Potato	nucleus	63.04	56.47
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	61.16	55.16
PGSC0003DMT400051898	Potato	cytosol	60.41	54.58
CDY55831	Canola	mitochondrion	50.47	54.23
CDX73462	Canola	plastid	56.1	53.39
Os03t0633400-01	Rice	extracellular, vacuole	33.58	53.27
CDX78253	Canola	plastid	55.72	52.94
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	46.15	52.45
AT3G54650.1	Thale cress	plastid	58.16	52.28
CDY64339	Canola	plastid	55.16	51.94
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.47	51.74
Bra007086.1-P	Field mustard	plastid	55.91	51.38
GSMUA_Achr2P12640_001	Banana	plastid	54.03	51.25
TraesCS5B01G382000.4	Wheat	plastid	50.09	50.86
Os12t0601000-00	Rice	plastid	50.28	47.86
TraesCS5D01G388400.1	Wheat	plastid	50.28	47.77
TraesCS5A01G378400.1	Wheat	plastid	50.28	47.35
EER93780	Sorghum	plastid	52.72	47.31
Zm00001d033321_P001	Maize	plastid	48.41	44.71
Zm00001d030990_P001	Maize	cytosol	49.72	44.61
Zm00001d041414_P002	Maize	cytosol	49.72	44.17
TraesCS5D01G069500.1	Wheat	plastid	49.16	43.96
TraesCS5B01G058300.1	Wheat	plastid	49.16	43.89
TraesCS5A01G058400.2	Wheat	plastid	48.41	43.14
OQU79521	Sorghum	plastid	48.03	41.42
HORVU5Hr1G093570.1	Barley	plastid	12.38	39.76
HORVU5Hr1G014320.7	Barley	plastid	49.72	38.8
HORVU5Hr1G093590.1	Barley	extracellular	42.59	38.74
Bra014802.1-P	Field mustard	plastid	54.6	37.16
Os03t0633100-00	Rice	plastid	12.76	33.01

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A0R0KJP3	EMBL:ACUP02002051	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_03G1589001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
EnsemblPlants:KRH67292	ProteinID:KRH67292	ProteinID:KRH67292.1	InterPro:LRR_dom_sf	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0006EDC1E2	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:37422465..37427132

Molecular Weight (calculated)

58046.8 Da

IEP (calculated)

7.422

GRAVY (calculated)

-0.087

Length

533 amino acids

Sequence
(BLAST)

001: MLPLPSSLTK RNSNTMQHFH PEPLIVPTVS SDANRGGKKR GNYNCGRCGL PKKGHDCSSK TTPTPTSAST VTPSHSSFSA VSASFRPSSH LRRALSFDED
101: ETGRFDPSEP VDAWPEEDDL DSSGLPGNLL WEVLRRLPPA GLLSAAKVSR GWREMTRSLW RAAEELRIRV PAWAQVGFVS SILQKCPGIV KLSLRMESDV
201: DSTMLACIAF SCLNLAFLEI SVSDTAVNRI SGVELARFVA DKKSLKSLKM EGCSNLGGFV LCSSSLSTLW LSDLYSLSKM VFNCPQLREI SLEFAHRESD
301: STDLSNMVQG LGRSCPRLQN MHISSMRLSH AAVLALTAAK LSGLRMLSLI LGSEVTDASI AAIASSYLNL ELLDLSGSSV SDSGVSMICN VFSETLTRLL
401: LALCPNVTSS GIQFATAQLP HLELMDCGMT ICEPNSHHPT ADENNRKLQK TSSTNLHLTN QKLIIKHSCL KKLSLWGCSG LDALYLNCPQ LNDLNLNSCR
501: NLHPERLLLQ CPSLENVHAS GCQDMLIEAI QSQ

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.