Factsheet for Zm00001d041414_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014046_P001
Zm00001d027585_P001
Zm00001d032732_P002
Zm00001d048363_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Zm00001d014046_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d027585_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d032732_P002	AT2G32710.1	18948957
AT3G54650.1	Zm00001d048363_P001	AT2G32710.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030990_P001	Maize	cytosol	80.0	80.81
OQU79521	Sorghum	plastid	75.17	72.98
Os12t0601000-00	Rice	plastid	66.17	70.89
TraesCS5B01G058300.1	Wheat	plastid	68.17	68.51
TraesCS5D01G069500.1	Wheat	plastid	67.83	68.29
TraesCS5A01G058400.2	Wheat	plastid	67.67	67.89
HORVU5Hr1G014320.7	Barley	plastid	67.5	59.3
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.0	57.57
Zm00001d033321_P001	Maize	plastid	53.83	55.98
GSMUA_Achr4P21010_001	Banana	mitochondrion	45.33	55.62
GSMUA_Achr2P12640_001	Banana	plastid	51.17	54.63
VIT_07s0141g00330.t01	Wine grape	plastid	50.67	52.96
KRG90050	Soybean	cytosol	5.0	51.72
KRH67292	Soybean	cytosol	44.17	49.72
KRH71335	Soybean	nucleus	48.17	48.98
CDY64339	Canola	plastid	46.17	48.94
KRG95622	Soybean	nucleus, plastid	48.83	48.83
Solyc09g065880.2.1	Tomato	nucleus	47.83	48.48
PGSC0003DMT400049672	Potato	nucleus	47.67	48.07
PGSC0003DMT400051898	Potato	cytosol	47.0	47.8
CDX78253	Canola	plastid	44.67	47.77
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	47.0	47.72
CDX73462	Canola	plastid	44.5	47.68
KRH32101	Soybean	nucleus	47.0	47.64
CDY55831	Canola	mitochondrion	39.17	47.38
Bra007086.1-P	Field mustard	plastid	44.83	46.38
AT3G54650.1	Thale cress	plastid	45.67	46.21
Bra014802.1-P	Field mustard	plastid	46.33	35.5

Protein Annotations

EnsemblPlants:Zm00001d041414_P002	EnsemblPlants:Zm00001d041414_T002	EnsemblPlantsGene:Zm00001d041414	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44840	PANTHER:PTHR44840:SF2	PFAM:PF00646	ProteinID:ONM32948.1	SEG:seg	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000844EC87	UniProt:A0A1D6MVW6	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box/LRR-repeat protein 17

Coordinates

chr3:+:117921013..117927080

Molecular Weight (calculated)

63915.1 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.053

Length

600 amino acids

Sequence
(BLAST)

001: MASDATDAPA QPVPAKRRGS YNCGRCGLPK KGHVCSVPGP ASSAAAGGGD KAGEPQPQTK PRRALHFDDP AASAVVLDAV PLAVSAPPLQ AGSKKAVDVE
101: EDGDGDNDPP AERWVEVGAG RRAPGVVLVE VLRRLSPRSV AAAAGVSRGW HECARRVWRA AEEVRLCAAG VSSVGALMAR CPALARLVLR MDCDVDATTL
201: ACIAFSCPNL QSLDISMANS AANRISGDEL SRFVSEKRSL SVLKLDGCSS LGFINISSSS LSRLWMSGLS SLTKAVMNCP NLNELSLDFP KQNNDSTDLV
301: ALMDSLGRTC PNLRNMHISS DRLCNEAVFA LESANLRGMC MLSLVLGSKI TDAAVASIVR SYASLELLDL SGSGITDNGL GMISNTFPNT LTRLLLALCP
401: NITPCGIQVA AAQLPLLRLM DCGKSICANP QPEAGRSYSG DLTDGIKFCS KLPVQRKQQA TCQKLIIKHS ALKKLSLWGC SGIDALYVSC PELVELNLNS
501: CTNLHPVSPR ADINSVSERL LIQCPKLEDV HVNGCRDMLV GAIRNQVLNE FAAAAPRVPC KRLADGSKRV HVPHYMVEQL EEHEKWGSRP RKSQCTVHLT

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.