Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76267 | Canola | cytosol | 97.73 | 97.73 |
| CDY57739 | Canola | cytosol | 97.73 | 95.56 |
| Zm00001d048394_P001 | Maize | nucleus | 86.36 | 87.36 |
| KXG40187 | Sorghum | nucleus | 85.23 | 86.21 |
| KRH25143 | Soybean | cytosol | 78.41 | 81.18 |
| Bra034380.1-P | Field mustard | cytosol | 73.86 | 80.25 |
| Zm00001d027655_P001 | Maize | cytosol | 77.27 | 65.38 |
| Zm00001d015611_P002 | Maize | plastid | 69.32 | 34.08 |
Protein Annotations
| MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | EnsemblPlantsGene:Bra034614 | EnsemblPlants:Bra034614.1 | EnsemblPlants:Bra034614.1-P | InterPro:Cyclin-dep_kinase_reg-sub |
| InterPro:Cyclin-dep_kinase_reg-sub_sf | GO:GO:0000278 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0042023 | GO:GO:0045859 | GO:GO:0051301 | GO:GO:0051726 | InterPro:IPR036858 | UniProt:M4F0L9 |
| PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | SMART:SM01084 |
| SUPFAM:SSF55637 | UniParc:UPI000254657B | SEG:seg | : | : | : |
Description
AT2G27960 (E=4e-040) CKS1, CKS1AT | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding
Coordinates
chrA08:-:12518497..12519213
Molecular Weight (calculated)
10590.6 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.892
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MGQIQYSDKY FDDTFEYRHV VLPPDTAKLL PKNRLLSENE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRT LNYQQQQQEN QAHNVLAK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.