CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95964
KRH00551
KRH13310
KRH20664
KRH22332
KRH24117
KRH26995
KRH29089
KRH40615
KRH63701
KRH67672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	KRH22332	AT1G03840.1	17785527
AT4G37650.1	KRH26995	AT1G03840.1	17785527
AT4G37650.1	KRH13310	AT3G12280.1	22921914
AT4G37650.1	KRH20664	AT3G12280.1	22921914
AT4G37650.1	KRH63701	AT3G12280.1	22921914
AT4G37650.1	KRH00551	AT3G54220.1	17446396
AT4G37650.1	KRH40615	AT3G54220.1	17446396
AT4G37650.1	KRH00551	AT3G54220.1	17785527
AT4G37650.1	KRH40615	AT3G54220.1	17785527
AT4G37650.1	KRH00551	AT3G54220.1	18500650
AT4G37650.1	KRH40615	AT3G54220.1	18500650
AT4G37650.1	KRH00551	AT3G54220.1	22921914
AT4G37650.1	KRH40615	AT3G54220.1	22921914
AT4G37650.1	KRG95964	AT5G03150.1	17785527
AT4G37650.1	KRH67672	AT5G03150.1	17785527
AT4G37650.1	KRH24117	AT5G41920.1	18500650
AT4G37650.1	KRH29089	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28353	Soybean	plastid	87.82	86.72
KRH58109	Soybean	cytosol, plastid	72.69	69.34
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	70.38	67.81
KRH04424	Soybean	plastid	70.59	66.8
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	69.54	65.29
PGSC0003DMT400055239	Potato	nucleus	61.34	64.18
Bra010606.1-P	Field mustard	nucleus	56.09	57.05
TraesCS2D01G194800.1	Wheat	cytosol, plastid	45.38	56.54
CDX72645	Canola	cytosol, plastid	62.6	56.02
AT4G37650.1	Thale cress	cytosol, plastid	62.4	55.93
CDY50264	Canola	nucleus, plastid	55.46	55.58
Bra017842.1-P	Field mustard	cytosol, plastid	61.76	55.26
Bra011777.1-P	Field mustard	cytosol, plastid	61.55	54.97
CDY44032	Canola	cytosol, plastid	60.29	54.67
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.3	50.38
KRH23228	Soybean	cytosol	46.22	49.66
KRH10104	Soybean	cytosol	45.38	49.43
GSMUA_Achr8P30950_001	Banana	mitochondrion	54.83	49.25
GSMUA_Achr4P16460_001	Banana	nucleus	53.36	47.83
Zm00001d021973_P001	Maize	nucleus	54.41	43.75
Zm00001d006721_P001	Maize	nucleus	53.36	43.34
TraesCS2A01G192600.1	Wheat	plastid	52.94	42.42
TraesCS2B01G214600.1	Wheat	nucleus, plastid	52.94	42.35
OQU90176	Sorghum	nucleus, plastid	53.15	42.31
Os07t0586900-01	Rice	plastid	53.15	42.03
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	51.26	40.46
HORVU2Hr1G035730.4	Barley	cytosol, plastid	49.16	39.26
Zm00001d029607_P001	Maize	plastid	51.68	39.05
EER94653	Sorghum	plastid	51.68	37.05
KRH26849	Soybean	cytosol	28.36	29.35
KRH22503	Soybean	cytosol	28.36	28.91
KRH04459	Soybean	plastid	26.26	25.93
KRH58050	Soybean	cytosol	27.94	25.33
KRH47610	Soybean	cytosol	25.21	22.14
KRH06192	Soybean	nucleus	24.79	21.73

Protein Annotations

EntrezGene:100820459	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:ACUP02000658	EnsemblPlantsGene:GLYMA_01G194200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956
GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	UniProt:I1J9E7
InterPro:IPR005202	EnsemblPlants:KRH77129	ProteinID:KRH77129	ProteinID:KRH77129.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI00023371D3	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:52852432..52854864

Molecular Weight (calculated)

54008.3 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.393

Length

476 amino acids

Sequence
(BLAST)

001: MDTTLFRVVS SFQHQHQPDH DQSLNNSTTS SSSRSSRQQQ NYPYPQEDEE CFNFFMDEED LSSSSSKHYC PYQPHPPSTT TIHHSFSPTP CDFEFSGKWA
101: QDILLETARA VADKNTTRLQ QLMWMLNELS SPYGDTDQKL ASYFLQAFFS RISQAGDRTY RTLASASEKT CSFESTRKTV LKFQEVSPWT TFGHVASNGA
201: ILEALEGEPK LHIIDISNTY CTQWPTLFEA LATRNDDTPH LRLTSVVTAD ATAQKLMKEI GARMEKFARL MGVPFKFNVV HHVGQLSDLD FSMLDIKEDE
301: ALAINCVNTL HSIAAVGNHR DAVISSLRRL KPRIVTLVEE EADLDVGLEG FEFVKGFEEC LRWFRVYFEA LDESFPRTSN ERLLLERAAG RAVVDLVACS
401: AAESVERRET AARWARRMHG GGLNTVAFSE EVCDDVRALL RRYREGWAMT QCSDAGIFLT WKEQPVVWAS AWRALT

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.