CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22503	Soybean	cytosol	91.96	90.58
VIT_12s0059g02770.t01	Wine grape	cytosol	68.04	70.34
PGSC0003DMT400067360	Potato	cytosol	61.74	66.51
Solyc07g052960.1.1	Tomato	cytosol	61.52	65.97
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	55.65	60.66
TraesCS1D01G319500.1	Wheat	cytosol	46.09	51.08
TraesCS1A01G319700.1	Wheat	cytosol	45.87	50.84
HORVU1Hr1G066390.1	Barley	cytosol	45.65	50.6
TraesCS1B01G332000.1	Wheat	cytosol	45.65	50.6
Os05t0500600-01	Rice	cytosol	45.87	49.65
Zm00001d038609_P001	Maize	cytosol	45.43	49.06
EES18455	Sorghum	cytosol	45.22	49.06
KXG33889	Sorghum	cytosol	29.78	42.68
KRH04459	Soybean	plastid	40.0	38.17
KRH58050	Soybean	cytosol	41.09	36.0
KRH23228	Soybean	cytosol	27.83	28.89
KRH77129	Soybean	plastid	29.35	28.36
KRH10104	Soybean	cytosol	26.52	27.92
KRH28353	Soybean	plastid	28.48	27.18
KRH58109	Soybean	cytosol, plastid	28.04	25.85
KRH04424	Soybean	plastid	26.96	24.65
KRH06192	Soybean	nucleus	22.61	19.15
KRH47610	Soybean	cytosol	21.74	18.45

Protein Annotations

EntrezGene:100805056	MapMan:15.5.12	EMBL:ACUP02007753	EnsemblPlantsGene:GLYMA_12G197300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LU93	InterPro:IPR005202	EnsemblPlants:KRH26849
ProteinID:KRH26849	ProteinID:KRH26849.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF5
InterPro:TF_GRAS	UniParc:UPI00023D0443	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:35841249..35843308

Molecular Weight (calculated)

51467.8 Da

IEP (calculated)

6.563

GRAVY (calculated)

-0.118

Length

460 amino acids

Sequence
(BLAST)

001: MHVTSSQSHM KAELKGTTSI SFQNPTTTLF NNPLSGALKG CLGSLDGACI EKLLLHCASA LESNDVTLAQ QVMWVLNNVA SPVGDTNQRL TSWFLRALIS
101: RASRICPTAM SFKGSNTIQR RLMSVTELAG YVDLIPWHRF GYCASNNEIY KAITGFQRVH IVDFSITHCM QWPTFIDALA KRPEGPPSLR ITVPSCRPHV
201: PPLVNISIHE VGLRLGNFAK FRDVPFEFNV IGNTGPLTTA ELSDESTNFH FEAMLSLLNP TMLNLREDEA LVINCQNWLR YLSDDRKGIS RQSLSLRDAF
301: LNIIKGLNPR IVLLVDEDCD LSASSLTSRI TTCFNHMWIP FDALETFLPK DSCQRSEFES DIGQKIENII SYEGHQRIER SESGVQMSQR MKNVGYLSVP
401: FCDETVREIK GLLDEHASGW GMKREEGMLV LTWKGNSCVF ATAWVPCEMR DHIGIDAGLS

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.