Factsheet for VIT_12s0059g02770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067360	Potato	cytosol	67.87	70.73
Solyc07g052960.1.1	Tomato	cytosol	67.42	69.93
KRH26849	Soybean	cytosol	70.34	68.04
KRH22503	Soybean	cytosol	70.56	67.24
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	62.92	66.35
TraesCS1D01G319500.1	Wheat	cytosol	49.21	52.77
TraesCS1B01G332000.1	Wheat	cytosol	48.99	52.53
TraesCS1A01G319700.1	Wheat	cytosol	48.76	52.29
EES18455	Sorghum	cytosol	49.66	52.12
Zm00001d038609_P001	Maize	cytosol	49.89	52.11
Os05t0500600-01	Rice	cytosol	49.44	51.76
HORVU1Hr1G066390.1	Barley	cytosol	48.09	51.57
KXG33889	Sorghum	cytosol	33.03	45.79
VIT_07s0129g00340.t01	Wine grape	plastid	45.62	44.62
VIT_00s0226g00070.t01	Wine grape	plastid	27.87	28.44
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	29.21	26.32
VIT_09s0002g01190.t01	Wine grape	nucleus	23.6	19.27

Protein Annotations

EntrezGene:100248290	wikigene:100248290	MapMan:15.5.12	EMBL:AM428833	ProteinID:CAN78012	ProteinID:CAN78012.1
ProteinID:CCB52072	ProteinID:CCB52072.1	UniProt:F6HIM6	EMBL:FN595765	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100248290	wikigene:LOC100248290
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF5	InterPro:TF_GRAS	UniParc:UPI000198461F
ArrayExpress:VIT_12s0059g02770	EnsemblPlantsGene:VIT_12s0059g02770	EnsemblPlants:VIT_12s0059g02770.t01	RefSeq:XP_002275420	RefSeq:XP_002275420.1	SEG:seg

Description

No Description!

Coordinates

chr12:+:7508963..7511106

Molecular Weight (calculated)

49851.6 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.144

Length

445 amino acids

Sequence
(BLAST)

001: MKAELRGNPP PISLQNSSLF NTPQNSLSGA LRGCLGSLDG ACIEKLLLHC ASALESNDVT LAQQVMWVLN NVASSMGDPN QRLASWFLRA LISRASRVCP
101: TTAMNFSGSS GLQRRLMTVT ELAEYVDLIP WHRFGFCAAN STIFNAIQGC PRVHILDFSI THCMQWPTLI DALAKRPEGP PSLRITVPSF RPPVPPLLNV
201: SSEEVGLRLA NFAKFRDVPF EFNVIEDSSS STMGEMISRE SSSLYSESLL NHLNASMLDL RDDEALVVNC QNWLRYLPDD QKGRAQNVSL RDTFLEVIKG
301: LNPRILVVVD EDADLGASSL TSRITTCFNY FWIPFDALET FLPKDNHQRI EYEADIGHKI EDIITYEGLQ RIERLESGPK LSQRMKSSGF LSIPFCEETV
401: REVKFLLDEH ASGWGMKREE DMLVLTWKGH NSIFATAWFP SGLED

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.