Factsheet for VIT_09s0002g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036577	Potato	cytosol	17.8	74.62
PGSC0003DMT400089692	Potato	nucleus	55.78	56.09
KRH47610	Soybean	cytosol	55.23	55.54
Solyc03g123400.1.1	Tomato	extracellular, nucleus	55.05	55.35
KRH06192	Soybean	nucleus	53.58	53.78
AT3G13840.1	Thale cress	cytosol	43.85	46.86
HORVU2Hr1G104160.1	Barley	cytosol	22.02	45.63
HORVU2Hr1G104170.1	Barley	cytosol	11.74	45.07
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	36.7	44.74
CDX97537	Canola	cytosol	39.82	42.63
Bra027378.1-P	Field mustard	cytosol	39.63	42.35
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	28.26	40.85
HORVU5Hr1G117780.1	Barley	mitochondrion	31.56	40.38
Os03t0408600-01	Rice	nucleus	37.98	39.58
Zm00001d029474_P001	Maize	cytosol	37.25	38.59
EER97527	Sorghum	nucleus	38.72	38.36
TraesCS2A01G460200.1	Wheat	nucleus	35.78	37.79
TraesCS2D01G460500.1	Wheat	nucleus	35.6	37.6
TraesCS2B01G481900.1	Wheat	nucleus	35.78	37.57
Zm00001d047266_P001	Maize	nucleus	35.6	36.26
OQU92409	Sorghum	cytosol	36.33	35.68
HORVU7Hr1G060780.1	Barley	cytosol, plastid	31.38	35.55
HORVU2Hr1G040860.3	Barley	mitochondrion	14.68	34.78
Zm00001d022116_P001	Maize	nucleus	34.13	34.13
HORVU7Hr1G115720.3	Barley	mitochondrion	27.16	32.82
VIT_00s0226g00070.t01	Wine grape	plastid	21.83	27.29
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	22.94	25.3
VIT_07s0129g00340.t01	Wine grape	plastid	20.55	24.62
Zm00001d048624_P001	Maize	nucleus	9.91	24.55
VIT_12s0059g02770.t01	Wine grape	cytosol	19.27	23.6

Protein Annotations

EntrezGene:100261706	wikigene:100261706	MapMan:15.5.12	MapMan:26.9.1.6.1	ProteinID:CCB59285	ProteinID:CCB59285.1
UniProt:F6HXW0	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0042446	GO:GO:0043565	GO:GO:2000032	InterPro:IPR005202
EntrezGene:LOC100261706	wikigene:LOC100261706	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40
InterPro:SCL29/NSP1	InterPro:TF_GRAS	UniParc:UPI00015C8576	ArrayExpress:VIT_09s0002g01190	EnsemblPlantsGene:VIT_09s0002g01190	EnsemblPlants:VIT_09s0002g01190.t01
unigene:Vvi.24206	RefSeq:XP_002273108	RefSeq:XP_002273108.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:910682..912662

Molecular Weight (calculated)

60329.2 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.542

Length

545 amino acids

Sequence
(BLAST)

001: MTIEEPEPNP TSDHILDWLE DSVSFLPSFL DDPYGSGDIS SYQWWDQGQE LDQDFTSYTD NSINCNSAAV AGAVTPCDPA SVDHLQLSDS SKKRKSPDDP
101: APRVAPNHQR KNQGRRASET EDGDAVEEAV AAKKSVGSKK ATGKATGNNC NNSNSKEGRW AEQLLNPCAT AITAGNLSRV QHLLYVLHEL ASSTGDANHR
201: LADHGLRALS HHLSSSVSVG PITFSSTEPR FFQRSLLKFY EVSPWFAFPN NIANTSILQI LNGVPSRSRN LHILDIGVSH GVQWPTLLEA LSRRSGGPPP
301: LVRLTVIAAT SDNDQNTETP FSIAPPGDNF SARLLSFAKS MNINLQINRL DNHPLQSLSP QLIDTSPDET LIVCAQFRLH HLNHNTPDER TEFLKVLRKL
401: EPEAVILSEN NMDCSCTNCG DFATGFSRRI EYLWKFLDST SAAFKGRESE ERRVMEGEAA RALTNPGEMN EGKEKWCERM RGVGFAGEVF GEDAIDGARA
501: LLKKYDSNWE MRVEEKDGCV GLWWKGLPVS FCSLWRLEDT KPNNS

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.