Factsheet for VIT_07s0129g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092570.1.1	Tomato	plastid	76.48	79.45
PGSC0003DMT400064187	Potato	plastid	75.38	78.31
GSMUA_Achr10P...	Banana	plastid	65.93	65.93
GSMUA_Achr6P07790_001	Banana	plastid	65.71	65.43
AT5G67411.1	Thale cress	cytosol, mitochondrion, nucleus	29.01	65.35
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	63.96	63.68
KRH04459	Soybean	plastid	67.03	63.28
AT3G49950.1	Thale cress	mitochondrion	54.95	60.98
KRH58050	Soybean	cytosol	69.45	60.19
EER97471	Sorghum	cytosol	59.12	59.12
Zm00001d021998_P001	Maize	plastid	59.12	58.99
CDY12844	Canola	cytosol, mitochondrion, plastid	56.04	58.89
Bra036041.1-P	Field mustard	mitochondrion	53.41	58.13
CDY58198	Canola	mitochondrion	53.19	57.89
CDY30617	Canola	mitochondrion	53.19	57.89
Zm00001d006744_P001	Maize	plastid	57.8	57.68
TraesCS2D01G193300.1	Wheat	plastid	57.8	57.3
HORVU2Hr1G035120.1	Barley	cytosol	57.58	57.21
TraesCS2A01G194600.1	Wheat	plastid	57.36	56.86
Os07t0589200-00	Rice	cytosol	58.46	56.24
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	56.7	51.09
VIT_12s0059g02770.t01	Wine grape	cytosol	44.62	45.62
VIT_00s0226g00070.t01	Wine grape	plastid	27.25	28.44
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	25.05	23.08
VIT_09s0002g01190.t01	Wine grape	nucleus	24.62	20.55

Protein Annotations

EntrezGene:100252691	wikigene:100252691	MapMan:15.5.12	UniProt:A5ANJ0	EMBL:AM430826	ProteinID:CAN62656
ProteinID:CAN62656.1	ProteinID:CCB57753	ProteinID:CCB57753.1	EMBL:FN596246	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100252691	wikigene:LOC100252691
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	InterPro:TF_GRAS	UniParc:UPI000151EFEB
ArrayExpress:VIT_07s0129g00340	EnsemblPlantsGene:VIT_07s0129g00340	EnsemblPlants:VIT_07s0129g00340.t01	unigene:Vvi.22037	RefSeq:XP_002279517	RefSeq:XP_002279517.2
RefSeq:XP_002279517.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:15603672..15605331

Molecular Weight (calculated)

50998.0 Da

IEP (calculated)

6.158

GRAVY (calculated)

-0.113

Length

455 amino acids

Sequence
(BLAST)

001: MMQFTETPPP PLHQITSFSN LPMNNNQIHR TRPWPGFPTS KALGSFGDAN CMEQLLVHCA NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTCGFLRAL
101: IARAANSGTC KMFTAMANAH ANLAINTHKF SVIELASFVD LTPWHRFGFA AANAAILEVV EGYSVIHIVD LSLTHCMQIP TLIDALANRP EGPPLVKLTV
201: AGATEDVPPM LDLSYEELGS KLVNFARSRN VMLEFRVIPS TSSDGFSSLI DQLRVQHLVY AESGEALIVN CHMMLHYIPE ETLSAIHSTN SSSYSVESSS
301: PSYHRTMFLK ALRTLNPTIV ILVDEDADFT SNNLVCRLRS AFNYLWIPYD TMDTFLPRGS KQRQWYEADI CWKIENVIAH EGPQRVERLE PKGRWVQRMR
401: NANFRSIMFS EDTVSEVKHM LDEHAAGWGL KKEEEDLVLT WKGHNVVFAT AWVPA

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.