Factsheet for VIT_00s0226g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037884	Potato	cytosol	66.51	69.21
GSMUA_Achr6P21350_001	Banana	cytosol	63.53	69.08
KRH10104	Soybean	cytosol	68.81	68.65
Solyc08g014030.1.1	Tomato	cytosol	65.14	67.94
KRH23228	Soybean	cytosol	68.81	67.72
GSMUA_Achr9P02380_001	Banana	cytosol	62.16	66.26
GSMUA_Achr10P...	Banana	cytosol	58.03	62.94
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	54.13	47.77
VIT_12s0059g02770.t01	Wine grape	cytosol	28.44	27.87
VIT_07s0129g00340.t01	Wine grape	plastid	28.44	27.25
VIT_09s0002g01190.t01	Wine grape	nucleus	27.29	21.83

Protein Annotations

EntrezGene:100264604	wikigene:100264604	EntrezGene:100854487	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:AM449211
ProteinID:CAN61051	ProteinID:CAN61051.1	ProteinID:CBI17688	ProteinID:CBI17688.3	UniProt:D7SPV9	EMBL:FN594961
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058
GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072
InterPro:IPR005202	EntrezGene:LOC100264604	wikigene:LOC100264604	EntrezGene:LOC100854487	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF36	InterPro:TF_GRAS	UniParc:UPI00019833A0	ArrayExpress:VIT_00s0226g00070	EnsemblPlantsGene:VIT_00s0226g00070
EnsemblPlants:VIT_00s0226g00070.t01	RefSeq:XP_002272196	RefSeq:XP_002272196.1	RefSeq:XP_019073724.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:14851614..14852928

Molecular Weight (calculated)

49307.4 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.384

Length

436 amino acids

Sequence
(BLAST)

001: MDRTLFTPKG TYFFHHPTQQ SNGTQPDMQS SNNQPQTSHT STSRSSDSGE PCVTGKWASS LLKECARAIS DKDSSRIHHL LWMLNELASP YGDCDQKLAS
101: YFLQALFCKA TESGHRCYKT LSSVAEKSHS FDSARKLILK FQEVSPWTTF GHVASNGAIL EALEGETKLH IIDISNTLCT QWPTLLEALA TRNDETPRLK
201: LTVVVTASLV RSVMKEIGQR MEKFARLMGV PFEFQVISGV NHLGELTKEG LGVRDDEAVA VNCIGALRRV EVEERRRVIQ TLQSLGPRVV TVVEEEADFS
301: SSRNDFVKCF EECLRFYTLY FEMLEESFVP TSNERLMLER ECSRSIVRVL ACDDIEDDTG EDCERREKGI QWSEGLKEVF SPLGFSEDVV DDVKALLKRY
401: RSGWALVPPQ QGENHQLGIY LTWKDEPVVW ASAWKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.