Factsheet for GSMUA_Achr10P16410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21350_001	Banana	cytosol	66.42	66.58
GSMUA_Achr9P02380_001	Banana	cytosol	67.16	66.01
VIT_00s0226g00070.t01	Wine grape	plastid	62.94	58.03
KRH10104	Soybean	cytosol	62.19	57.21
KRH23228	Soybean	cytosol	62.94	57.11
PGSC0003DMT400037884	Potato	cytosol	58.46	56.09
Solyc08g014030.1.1	Tomato	cytosol	57.71	55.5
GSMUA_Achr4P16460_001	Banana	nucleus	46.52	35.22
GSMUA_Achr8P30950_001	Banana	mitochondrion	46.27	35.09
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.27	34.96
GSMUA_Achr6P07790_001	Banana	plastid	31.34	27.57
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	28.61	27.25
GSMUA_Achr10P...	Banana	plastid	30.6	27.03
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	30.6	26.91
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	20.4	18.34

Protein Annotations

EnsemblPlants:GSMUA_Achr10P16410_001	EnsemblPlants:GSMUA_Achr10T16410_001	EnsemblPlantsGene:GSMUA_Achr10G16410_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF36	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000296980F
UniProt:M0RIR6	MapMan:15.5.12	MapMan:26.3.1.4	:	:	:

Description

Putative Protein SHORT-ROOT [Source:GMGC_GENE;Acc:GSMUA_Achr10G16410_001]

Coordinates

chr10:+:23951254..23952462

Molecular Weight (calculated)

44905.0 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.098

Length

402 amino acids

Sequence
(BLAST)

001: MQNTDPCHHH PSISCLLEPK DPREEEKWAA ELIQECAKAI AEKDSSKIHH LLWMLNELAT PYGDCDQKLA SYFLQALLCR ATEAGELCYT TLISAAEKQQ
101: SFVTARKVML KFQEVSPWTT FGHVASNGAI MEAMEGESKL HIVDISNTYC TQWPTLMEAL ASRGSDTPHL RLTVVAMVSM GGSVMDEIGR RMVKFARLMG
201: VPFEFRVVSI ASTLGQLTEE ELGLRKDEAV VVNCVGALRR VRVEERDAFV RMLCALRPRV VTVVEEEADF TTSKGDLVAC FEQCVKFYSI FLGMLEESFS
301: PTSNERFLLE KECSRSILGV LACNGGGVSE RREKASQWCE RLTEAFAPTA FNDDVIGDLE ALLERYREGW SLVPAKGNAA GLYLTWKAEP VVWASAWKPI
401: KP

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.