Factsheet for PGSC0003DMT400037884

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014030.1.1	Tomato	cytosol	89.5	89.71
VIT_00s0226g00070.t01	Wine grape	plastid	69.21	66.51
GSMUA_Achr6P21350_001	Banana	cytosol	62.29	65.09
KRH23228	Soybean	cytosol	67.3	63.66
KRH10104	Soybean	cytosol	65.87	63.16
GSMUA_Achr9P02380_001	Banana	cytosol	61.58	63.08
GSMUA_Achr10P...	Banana	cytosol	56.09	58.46
PGSC0003DMT400055239	Potato	nucleus	53.46	49.23
PGSC0003DMT400067360	Potato	cytosol	28.64	28.1
PGSC0003DMT400064187	Potato	plastid	28.64	27.4
PGSC0003DMT400036577	Potato	cytosol	8.11	26.15
PGSC0003DMT400089692	Potato	nucleus	24.34	18.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400037884	EnsemblPlantsGene:PGSC0003DMG400014615	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF36	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400014615	SEG:seg	UniParc:UPI0002950532
UniProt:M1B626	MapMan:15.5.12	MapMan:26.3.1.4	:	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014615]

Coordinates

chr8:+:6300086..6302059

Molecular Weight (calculated)

47856.8 Da

IEP (calculated)

5.257

GRAVY (calculated)

-0.409

Length

419 amino acids

Sequence
(BLAST)

001: MQNPNHHDNS SSSRSQSPED VEPVSDSKWA PRLLRECATA ISNKDSTKIH HLLWMLNELA SPYGDCNQKL AFYFLQALFC KATDTGLRCY KTLTSAAEKS
101: KSFDSSRKLI LKFQEVSPWT TFGHVASNGA ILEALDGENK LHIIDISNTF CTQWPTLLEA LATRNDETPH LKLTVVVMES TLVKSHVMKE VAQRMEKFAR
201: LMGVPFEFNV ISGLNHLKEL TKESLNIQEE EALAVNCIGA LRRVEVDERG AFIRMLQSLN PKVVTIVEHE ADFSSTRNDF VKCFEECLRF YTLYFEMLDE
301: SFPTTSNERL VIERECSKCI VKVLACDNNE IGDDQGDSER RERGNQWCTR LKECFTPFTL NDDAVDDVKA LLKRYKAGWS LVLPQANQES PGIYLTWREE
401: QVVWASSWKP QEKSMEVET

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.