CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10104	Soybean	cytosol	82.39	83.52
VIT_00s0226g00070.t01	Wine grape	plastid	67.72	68.81
GSMUA_Achr6P21350_001	Banana	cytosol	61.63	68.08
PGSC0003DMT400037884	Potato	cytosol	63.66	67.3
GSMUA_Achr9P02380_001	Banana	cytosol	61.17	66.26
Solyc08g014030.1.1	Tomato	cytosol	62.3	66.03
GSMUA_Achr10P...	Banana	cytosol	57.11	62.94
KRH28353	Soybean	plastid	51.24	47.1
KRH58109	Soybean	cytosol, plastid	52.14	46.29
KRH77129	Soybean	plastid	49.66	46.22
KRH04424	Soybean	plastid	50.79	44.73
KRH22503	Soybean	cytosol	29.35	27.84
KRH26849	Soybean	cytosol	28.89	27.83
KRH04459	Soybean	plastid	28.89	26.56
KRH58050	Soybean	cytosol	28.67	24.19
KRH47610	Soybean	cytosol	26.64	21.77
KRH06192	Soybean	nucleus	25.73	20.99

Protein Annotations

EntrezGene:100818806	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:ACUP02008458	EnsemblPlantsGene:GLYMA_13G345700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956
GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	UniProt:I1M578
InterPro:IPR005202	EnsemblPlants:KRH23228	ProteinID:KRH23228	ProteinID:KRH23228.1	PFAM:PF03514	PFscan:PS50985
InterPro:TF_GRAS	UniParc:UPI000233B0E8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:43631856..43633187

Molecular Weight (calculated)

50056.2 Da

IEP (calculated)

5.725

GRAVY (calculated)

-0.380

Length

443 amino acids

Sequence
(BLAST)

001: MDISPYTPPK KLSSHSTIHS NNHNNIIADE ATTLDHNNIM HRSNHSHTST SRSSDSGELS EDGKWAPKLL RECAKAISER DSTKTHHLLW MLNELASPYG
101: DCDQKLASYF LQALFCRATE SGERCYKTLS SVAEKNHSFD SARRLILKFQ EVSPWTTFGH VASNGALLEA LEGEPKLHII DLSSTLCTQW PTLLEALATR
201: NDETPHLKLT VVAIAGSVMK EVGQRMEKFA RLMGVPFEFN VISGLSQITK EGLGVQEDEA IAVNCVGALR RVQVEERENL IRVFKSLGPK VVTVVEEEAD
301: FCSSRGDFFK CFEECLKFYT LYFEMLKESF PPTSNERLML ERECSRSIVR VLACCGTGHE FEDDHGEFDC CERRERGIQW CERLRNAFSP SGFSDDVVDD
401: VKALLKRYQS GWSLVVTQGD EHISGIYLTW KEEPVVWASA WKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.