CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47610	Soybean	cytosol	83.98	84.13
PGSC0003DMT400036577	Potato	cytosol	16.21	67.69
VIT_09s0002g01190.t01	Wine grape	nucleus	53.78	53.58
Solyc03g123400.1.1	Tomato	extracellular, nucleus	50.28	50.37
PGSC0003DMT400089692	Potato	nucleus	50.09	50.18
AT3G13840.1	Thale cress	cytosol	41.44	44.12
HORVU2Hr1G104160.1	Barley	cytosol	21.36	44.11
CDX97537	Canola	cytosol	40.33	43.03
Bra027378.1-P	Field mustard	cytosol	40.33	42.94
HORVU2Hr1G104170.1	Barley	cytosol	10.87	41.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.23	39.15
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	25.97	37.4
HORVU2Hr1G040860.3	Barley	mitochondrion	15.84	37.39
HORVU5Hr1G117780.1	Barley	mitochondrion	29.1	37.09
TraesCS2A01G460200.1	Wheat	nucleus	34.25	36.05
Os03t0408600-01	Rice	nucleus	34.62	35.95
Zm00001d029474_P001	Maize	cytosol	34.44	35.55
HORVU7Hr1G060780.1	Barley	cytosol, plastid	31.49	35.55
TraesCS2D01G460500.1	Wheat	nucleus	33.52	35.27
TraesCS2B01G481900.1	Wheat	nucleus	33.52	35.07
Zm00001d047266_P001	Maize	nucleus	33.89	34.39
OQU92409	Sorghum	cytosol	34.62	33.87
EER97527	Sorghum	nucleus	33.52	33.09
Zm00001d022116_P001	Maize	nucleus	33.15	33.03
HORVU7Hr1G115720.3	Barley	mitochondrion	26.34	31.71
Zm00001d048624_P001	Maize	nucleus	10.87	26.82
KRH10104	Soybean	cytosol	20.99	26.09
KRH23228	Soybean	cytosol	20.99	25.73
KRH28353	Soybean	plastid	22.1	24.9
KRH77129	Soybean	plastid	21.73	24.79
KRH58109	Soybean	cytosol, plastid	22.47	24.45
KRH04424	Soybean	plastid	21.92	23.66
KRH04459	Soybean	plastid	20.99	23.65
KRH58050	Soybean	cytosol	22.65	23.43
KRH26849	Soybean	cytosol	19.15	22.61
KRH22503	Soybean	cytosol	19.15	22.27

Protein Annotations

EntrezGene:100810818	MapMan:15.5.12	MapMan:26.9.1.6.1	EMBL:ACUP02009816	EnsemblPlantsGene:GLYMA_16G008200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0043565
GO:GO:2000032	UniProt:I1MK09	InterPro:IPR005202	EnsemblPlants:KRH06192	ProteinID:KRH06192	ProteinID:KRH06192.1
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	InterPro:TF_GRAS
UniParc:UPI000233B642	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:669746..672318

Molecular Weight (calculated)

60156.9 Da

IEP (calculated)

6.123

GRAVY (calculated)

-0.643

Length

543 amino acids

Sequence
(BLAST)

001: MIMEPNPTSD HSLDWFEGSV SYFPPLLDYP YDSGDIQDYQ LWEQDITSHY QTDTNTSSSP NATNISTTTT PLETCDSNNN LPLSDLPKKR NATDESSPKP
101: PQNHKHKKIK SKPINNEAYT GHAEGTTTTT VRKSGGNKKG GAKANGNNCN NKDGRWAEQL LNPCAAAITG GNLNRVQHLS YVLHELASPT GDANHRLAAH
201: GLKALTQHLS SSPSSGSITF ASSEPRFFQK TLLKFYEVSP WFSFPNNIAN ASILQVLGED TDNNSRTLHI LDIGVSHGMQ WPTFLEALSR RPGGPPPLVR
301: LTVVTASSST ENDTPFCIGP PGDNFSSRLL GFAQSMNVNL QINKLDNCPL HTLNAQSVDT SPDEIFVVCA QFRLHQLNHN APDERSEFLK VLRNMEPKGV
401: ILSDNNMGCC CNCCGDFTTG FSRRVEYLWR FLDSTSSAFK GRESDERRVM EGEAAKALTN QRETNEGKEK WCERMKEAGF VGEVFGEDAI DGGRALLRKY
501: DGNWEMKVED DNTSVGLWWK GQSVSFCSLW KLDGNYKTST FTS

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.