Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G104170.1 | Barley | cytosol | 25.78 | 93.66 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 45.93 | 90.11 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 84.69 | 84.69 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 84.69 | 84.2 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 56.2 | 76.92 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 62.98 | 76.29 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 67.05 | 71.93 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 27.71 | 62.17 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 53.88 | 61.64 |
| Os03t0408600-01 | Rice | nucleus | 60.08 | 59.27 |
| OQU92409 | Sorghum | cytosol | 63.57 | 59.1 |
| Zm00001d047266_P001 | Maize | nucleus | 59.3 | 57.2 |
| Zm00001d029474_P001 | Maize | cytosol | 57.36 | 56.27 |
| PGSC0003DMT400036577 | Potato | cytosol | 11.05 | 43.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 33.14 | 38.26 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 37.6 | 35.79 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 37.79 | 35.78 |
| AT3G13840.1 | Thale cress | cytosol | 35.08 | 35.49 |
| KRH47610 | Soybean | cytosol | 37.02 | 35.24 |
| Zm00001d048624_P001 | Maize | nucleus | 14.92 | 35.0 |
| KRH06192 | Soybean | nucleus | 36.05 | 34.25 |
| PGSC0003DMT400089692 | Potato | nucleus | 35.85 | 34.13 |
| CDX97537 | Canola | cytosol | 32.95 | 33.4 |
| Bra027378.1-P | Field mustard | cytosol | 32.75 | 33.14 |
| TraesCS2A01G194600.1 | Wheat | plastid | 23.26 | 26.14 |
| TraesCS1A01G319700.1 | Wheat | cytosol | 20.74 | 25.78 |
| TraesCS2A01G192600.1 | Wheat | plastid | 22.87 | 19.87 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G460200.1 | EnsemblPlantsGene:TraesCS2A01G460200 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0042446 | GO:GO:2000032 | InterPro:IPR005202 | InterPro:SCL29/NSP1 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 |
| MapMan:26.9.1.6.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:706763420..706764970
Molecular Weight (calculated)
54556.6 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.146
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MNYHEKEGQE LAVVATSDGL DWLEDSVSLL AGDIDLGGSY GWWCDILPAQ KDDIGSVVAQ TLSPPAPPAT SSPLAHPSPS IASPAPSEPS PKKRKSPAHV
101: VSGSGHSSSS NQRRRTEQDR PGGGGKKGGG AGSDRDARWA EQLLGPCAVA VEARNLSRVQ HLFYVLGELA AFSGDANHRL AAYGLRALSL RLPAAVGPAA
201: AAAVRVPAAC ESPTPSFAGA EPRLFRASLI KFHEVSPWFT LPNTLANAAI SQLASAAPRP LHLVDIGVSH GVQWPTLLES LTRMAAGRAP PSVRLTVVAT
301: PPVPFSASPP GYDFAPHLLR YAKSIKLDLE IGRASSLDPA HGFCTSPDEA LVVCLQFRLG HVTAEERTDI IRRVRDLKPH LVVLSELDVG GNGSAAGEFT
401: ARLELLWRFL ESTHAAFKGR DGEDRRLLEA EAGTAVAVAA AREAMGREGW RDRMAAAGFE QVAFGGEAVE SARSLLRKYD NGWEMSTAAV ATGGGGAVAL
501: RWKGQPVSFC SLWRPA
101: VSGSGHSSSS NQRRRTEQDR PGGGGKKGGG AGSDRDARWA EQLLGPCAVA VEARNLSRVQ HLFYVLGELA AFSGDANHRL AAYGLRALSL RLPAAVGPAA
201: AAAVRVPAAC ESPTPSFAGA EPRLFRASLI KFHEVSPWFT LPNTLANAAI SQLASAAPRP LHLVDIGVSH GVQWPTLLES LTRMAAGRAP PSVRLTVVAT
301: PPVPFSASPP GYDFAPHLLR YAKSIKLDLE IGRASSLDPA HGFCTSPDEA LVVCLQFRLG HVTAEERTDI IRRVRDLKPH LVVLSELDVG GNGSAAGEFT
401: ARLELLWRFL ESTHAAFKGR DGEDRRLLEA EAGTAVAVAA AREAMGREGW RDRMAAAGFE QVAFGGEAVE SARSLLRKYD NGWEMSTAAV ATGGGGAVAL
501: RWKGQPVSFC SLWRPA
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.