Factsheet for Zm00001d047266_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104170.1	Barley	cytosol	18.88	71.13
Zm00001d029474_P001	Maize	cytosol	66.92	68.06
OQU92409	Sorghum	cytosol	69.16	66.67
TraesCS2B01G481900.1	Wheat	nucleus	63.18	65.13
TraesCS2D01G460500.1	Wheat	nucleus	62.43	64.73
HORVU2Hr1G104160.1	Barley	cytosol	31.78	64.64
Os03t0408600-01	Rice	nucleus	61.68	63.1
Zm00001d048624_P001	Maize	nucleus	25.42	61.82
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	42.43	60.21
TraesCS2A01G460200.1	Wheat	nucleus	57.2	59.3
HORVU5Hr1G117780.1	Barley	mitochondrion	45.79	57.51
HORVU7Hr1G060780.1	Barley	cytosol, plastid	49.16	54.68
HORVU2Hr1G040860.3	Barley	mitochondrion	22.06	51.3
Zm00001d022116_P001	Maize	nucleus	50.65	49.72
HORVU7Hr1G115720.3	Barley	mitochondrion	40.75	48.34
PGSC0003DMT400036577	Potato	cytosol	11.03	45.38
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.71	39.15
VIT_09s0002g01190.t01	Wine grape	nucleus	36.26	35.6
Solyc03g123400.1.1	Tomato	extracellular, nucleus	35.89	35.42
AT3G13840.1	Thale cress	cytosol	33.64	35.29
PGSC0003DMT400089692	Potato	nucleus	34.77	34.32
KRH06192	Soybean	nucleus	34.39	33.89
Bra027378.1-P	Field mustard	cytosol	32.15	33.73
CDX97537	Canola	cytosol	31.96	33.6
KRH47610	Soybean	cytosol	34.02	33.58
Zm00001d006744_P001	Maize	plastid	23.74	27.85
Zm00001d021998_P001	Maize	plastid	23.55	27.63
Zm00001d038609_P001	Maize	cytosol	19.25	24.18
Zm00001d006721_P001	Maize	nucleus	22.8	20.82
Zm00001d021973_P001	Maize	nucleus	22.62	20.44
Zm00001d029607_P001	Maize	plastid	22.99	19.52

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	ProteinID:AIB05506.1	ProteinID:AQL06033.1	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202
UniProt:K7VD41	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1
InterPro:TF_GRAS	UniParc:UPI000220CA04	EnsemblPlantsGene:Zm00001d047266	EnsemblPlants:Zm00001d047266_P001	EnsemblPlants:Zm00001d047266_T001	SEG:seg

Description

GRAS-transcription factor 74Scarecrow-like protein 29

Coordinates

chr9:-:124861500..124863107

Molecular Weight (calculated)

55758.3 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.173

Length

535 amino acids

Sequence
(BLAST)

001: MKPMSCHEQE QHAELAAATT NSGFDWLDDP ISFLTADVDA AGCGGYGWWS DDPAAAQQDN IGSVVAQTLS PPAAPLLTTS PPLAHTSPSI ASPAVSEPSS
101: KKRKSPAHRA SAHSGSNQRR RADQADRPGA GGGKKGGGAG SDDRDTRWAE QLLNPCAAAV EAGNLTRVQH LFYVLGELAS FSGDANHRLA AHGLRALARS
201: RLPAAVGPAA AAAVRVPPCD CPTPAFAGAE PRLFRASLIR FHEVSPWFAL PNALANAAIA RAASRGGSTP AEQPRPLHVV DLGVSHGVQW PTLLESLTRL
301: SGGRAPPSVC LITVAAAPPA PFSASPPGYD FSPHLLRYAK SISLQLAISR AASLDSVRGL ASPSASGEEA LVVCIQFRLG HASADERTEI LRKVRGLDPE
401: LVVVSELDGG GDGTAAGEFT ARLELLWRFL ESTSAAFKGR DGDERRLLEA EAGASLVASE APALEGREAW REAMAAAGFE EASFGDEAVE SAKSLLRKYD
501: GGWEMSASGA AGAVALRWKG QPVSFCSLWR PACSG

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.