Factsheet for HORVU2Hr1G040860.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104160.1	Barley	cytosol	60.43	52.85
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	55.65	33.95
Zm00001d048624_P001	Maize	nucleus	29.57	30.91
HORVU5Hr1G117780.1	Barley	mitochondrion	56.52	30.52
HORVU7Hr1G060780.1	Barley	cytosol, plastid	61.3	29.31
TraesCS2A01G460200.1	Wheat	nucleus	62.17	27.71
TraesCS2D01G460500.1	Wheat	nucleus	57.83	25.78
TraesCS2B01G481900.1	Wheat	nucleus	57.39	25.43
Zm00001d047266_P001	Maize	nucleus	51.3	22.06
OQU92409	Sorghum	cytosol	51.3	21.26
Zm00001d029474_P001	Maize	cytosol	47.83	20.91
Os03t0408600-01	Rice	nucleus	47.39	20.84
KRH06192	Soybean	nucleus	37.39	15.84
KRH47610	Soybean	cytosol	36.96	15.68
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	30.43	15.66
AT3G13840.1	Thale cress	cytosol	33.48	15.1
CDX97537	Canola	cytosol	32.61	14.73
Bra027378.1-P	Field mustard	cytosol	32.61	14.71
VIT_09s0002g01190.t01	Wine grape	nucleus	34.78	14.68
HORVU7Hr1G115720.3	Barley	mitochondrion	28.7	14.63
PGSC0003DMT400089692	Potato	nucleus	31.74	13.47
Solyc03g123400.1.1	Tomato	extracellular, nucleus	31.74	13.47
HORVU1Hr1G066390.1	Barley	cytosol	20.0	11.08
HORVU2Hr1G035120.1	Barley	cytosol	20.87	10.48
HORVU2Hr1G035730.4	Barley	cytosol, plastid	25.65	9.9
PGSC0003DMT400036577	Potato	cytosol	1.74	3.08
HORVU2Hr1G104170.1	Barley	cytosol	1.3	2.11

Protein Annotations

MapMan:35.1	UniProt:A0A287HT49	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G040860	EnsemblPlants:HORVU2Hr1G040860.3	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	InterPro:TF_GRAS
UniParc:UPI000B4877CB	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:198414620..198417143

Molecular Weight (calculated)

24933.2 Da

IEP (calculated)

11.514

GRAVY (calculated)

-0.256

Length

230 amino acids

Sequence
(BLAST)

001: MLHLLLQRKT VTPPRKKEPI KYRNLRTMHL RRGLRVQLPL PVRLAVSGSG HGSSNQRHRT EQDRPGGGKK GGGAGSDRDA RWAEQLLGPC AVAVEARNLS
101: RVQHLFYVGE LAAFSGDANH RLAAYGLRAL SLRLPAAVGP AAVRVPAACE CPTPSFAAAE PRLFRASLIK FHEVCSWFTL PNTLANAAIS QLASPALHLI
201: DIGVSHGVQW PTLLEPSPAW PPDGRRRPSG

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.