Factsheet for HORVU2Hr1G035730.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003230.2
HORVU2Hr1G036710.3
HORVU4Hr1G039890.2
HORVU5Hr1G045920.2
HORVU7Hr1G055440.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	HORVU2Hr1G036710.3	AT1G03840.1	17785527
AT4G37650.1	HORVU4Hr1G039890.2	AT3G12280.1	22921914
AT4G37650.1	HORVU7Hr1G055440.9	AT3G12280.1	22921914
AT4G37650.1	HORVU5Hr1G045920.2	AT3G54220.1	17446396
AT4G37650.1	HORVU5Hr1G045920.2	AT3G54220.1	17785527
AT4G37650.1	HORVU5Hr1G045920.2	AT3G54220.1	18500650
AT4G37650.1	HORVU5Hr1G045920.2	AT3G54220.1	22921914
AT4G37650.1	HORVU0Hr1G003230.2	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G194800.1	Wheat	cytosol, plastid	62.58	97.64
TraesCS2B01G214600.1	Wheat	nucleus, plastid	67.28	67.39
TraesCS2A01G192600.1	Wheat	plastid	67.11	67.34
Zm00001d006721_P001	Maize	nucleus	62.75	63.82
OQU90176	Sorghum	nucleus, plastid	62.75	62.54
Zm00001d021973_P001	Maize	nucleus	62.08	62.5
Os07t0586900-01	Rice	plastid	63.09	62.46
GSMUA_Achr8P30950_001	Banana	mitochondrion	51.68	58.11
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.17	57.33
GSMUA_Achr4P16460_001	Banana	nucleus	49.16	55.18
PGSC0003DMT400055239	Potato	nucleus	38.59	50.55
KRH77129	Soybean	plastid	39.26	49.16
KRH28353	Soybean	plastid	39.09	48.34
Bra010606.1-P	Field mustard	nucleus	37.42	47.65
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	38.93	46.96
KRH58109	Soybean	cytosol, plastid	39.09	46.69
CDY50264	Canola	nucleus, plastid	36.41	45.68
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	38.59	45.36
KRH04424	Soybean	plastid	38.09	45.13
AT4G37650.1	Thale cress	cytosol, plastid	38.26	42.94
Bra017842.1-P	Field mustard	cytosol, plastid	38.26	42.86
CDY44032	Canola	cytosol, plastid	37.75	42.86
CDX72645	Canola	cytosol, plastid	38.09	42.67
Bra011777.1-P	Field mustard	cytosol, plastid	37.92	42.4
HORVU1Hr1G066390.1	Barley	cytosol	22.48	32.29
HORVU2Hr1G035120.1	Barley	cytosol	21.31	27.73
HORVU2Hr1G104160.1	Barley	cytosol	11.91	27.0
HORVU2Hr1G104170.1	Barley	cytosol	6.38	26.76
HORVU2Hr1G040860.3	Barley	mitochondrion	9.9	25.65
HORVU5Hr1G117780.1	Barley	mitochondrion	16.44	23.0
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	13.42	21.22
HORVU7Hr1G060780.1	Barley	cytosol, plastid	16.95	21.0
HORVU7Hr1G115720.3	Barley	mitochondrion	15.44	20.4

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	UniProt:A0A287HPK6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565
GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	EnsemblPlantsGene:HORVU2Hr1G035730	EnsemblPlants:HORVU2Hr1G035730.4	InterPro:IPR005202
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS
UniParc:UPI000B46F0F0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:152816104..152818096

Molecular Weight (calculated)

51971.5 Da

IEP (calculated)

8.752

GRAVY (calculated)

-0.227

Length

596 amino acids

Sequence
(BLAST)

001: ITSHRSGQKR GERPSISPQK IQVELRRGAK RAHRAGGAPA FLPLKRIHIA TPHTXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGTASSGA VGGGGGGRWA SQLLMECARA
201: VATRESQRVQ QLMWMLNELA SPYGDVEQKL ASYFLQGLFA RLTASGPRTL RTLAAATDRN TSFDSTRRTA LRFQELSPWS SFGHVAANGA ILESFLEAAA
301: ASSEPQRFHI LDLSNTFCTQ WPTLLEALAT RSPDDTPHLS ITTVVSAAPS APTSAVQRVM REIGQRMEKF ARLMGVPFRF RAVHHSGDLA ELDLDSLDLR
401: EGGANTGIAV NCMNSLRGVV PGGARRRGVF AASLRRLEPR IVTVVEEEAD LVATDPDASD EGCDTEAAFL KVFGEGLRFF SAYMDSLEES FPKTSNERLA
501: LERGAGRAIV DLVSCPASES MERRETAAAW ARRLRSAGFS PVPFSEDVAD DVRSLLRRYR EGWSMREAST DESAAGAGVF LAWKEQPLVW ASAWRP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.