Factsheet for HORVU2Hr1G104170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036577	Potato	cytosol	37.32	40.77
HORVU7Hr1G115720.3	Barley	mitochondrion	89.44	28.16
TraesCS2D01G460500.1	Wheat	nucleus	95.07	26.16
TraesCS2B01G481900.1	Wheat	nucleus	94.37	25.82
TraesCS2A01G460200.1	Wheat	nucleus	93.66	25.78
HORVU7Hr1G060780.1	Barley	cytosol, plastid	86.62	25.57
HORVU5Hr1G117780.1	Barley	mitochondrion	72.54	24.18
Zm00001d029474_P001	Maize	cytosol	75.35	20.34
Os03t0408600-01	Rice	nucleus	73.24	19.89
OQU92409	Sorghum	cytosol	74.65	19.1
Zm00001d047266_P001	Maize	nucleus	71.13	18.88
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	45.77	17.24
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.25	13.42
VIT_09s0002g01190.t01	Wine grape	nucleus	45.07	11.74
AT3G13840.1	Thale cress	cytosol	41.55	11.57
Solyc03g123400.1.1	Tomato	extracellular, nucleus	43.66	11.44
PGSC0003DMT400089692	Potato	nucleus	42.96	11.25
CDX97537	Canola	cytosol	40.14	11.2
Bra027378.1-P	Field mustard	cytosol	40.14	11.18
KRH47610	Soybean	cytosol	42.25	11.07
KRH06192	Soybean	nucleus	41.55	10.87
HORVU2Hr1G035120.1	Barley	cytosol	30.99	9.61
HORVU1Hr1G066390.1	Barley	cytosol	23.24	7.95
HORVU2Hr1G035730.4	Barley	cytosol, plastid	26.76	6.38
Zm00001d048624_P001	Maize	nucleus	4.23	2.73
HORVU2Hr1G040860.3	Barley	mitochondrion	2.11	1.3
HORVU2Hr1G104160.1	Barley	cytosol	0.7	0.38

Protein Annotations

EnsemblPlants:HORVU2Hr1G104170.1	EnsemblPlantsGene:HORVU2Hr1G104170	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:

Description

No Description!

Coordinates

chrchr2H:-:702218400..702219149

Molecular Weight (calculated)

15001.6 Da

IEP (calculated)

5.274

GRAVY (calculated)

-0.218

Length

142 amino acids

Sequence
(BLAST)

001: XDLKPQLVVL SELDVGGNGS AAGEFTARLE LLWRFLESTH AAFKGRDGED RRLLEAEAGT GVAVAAAREA MGREGWRDRM TAAGFDQVAF GGEAVESARS
101: LLRKYDNGWE MSTAAAATGG GGAVALRWKG QPVSFCSLWR PA

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.