Factsheet for TraesCS2B01G481900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G460500.1	Wheat	nucleus	96.72	97.29
HORVU2Hr1G104170.1	Barley	cytosol	25.82	94.37
HORVU2Hr1G104160.1	Barley	cytosol	43.55	85.93
TraesCS2A01G460200.1	Wheat	nucleus	84.2	84.69
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	57.42	79.05
HORVU5Hr1G117780.1	Barley	mitochondrion	63.01	76.76
HORVU7Hr1G060780.1	Barley	cytosol, plastid	64.74	69.85
Zm00001d047266_P001	Maize	nucleus	65.13	63.18
HORVU7Hr1G115720.3	Barley	mitochondrion	53.56	61.64
Os03t0408600-01	Rice	nucleus	60.69	60.23
OQU92409	Sorghum	cytosol	63.2	59.1
Zm00001d029474_P001	Maize	cytosol	58.19	57.41
HORVU2Hr1G040860.3	Barley	mitochondrion	25.43	57.39
Zm00001d048624_P001	Maize	nucleus	20.62	48.64
PGSC0003DMT400036577	Potato	cytosol	10.98	43.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	32.37	37.58
VIT_09s0002g01190.t01	Wine grape	nucleus	37.57	35.78
Solyc03g123400.1.1	Tomato	extracellular, nucleus	37.19	35.61
AT3G13840.1	Thale cress	cytosol	34.68	35.29
PGSC0003DMT400089692	Potato	nucleus	36.42	34.87
KRH47610	Soybean	cytosol	35.45	33.95
KRH06192	Soybean	nucleus	35.07	33.52
CDX97537	Canola	cytosol	32.56	33.2
Bra027378.1-P	Field mustard	cytosol	32.56	33.14
TraesCS1B01G332000.1	Wheat	cytosol	20.23	25.3
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	23.31	23.96
TraesCS2B01G214600.1	Wheat	nucleus, plastid	23.51	20.5

Protein Annotations

EnsemblPlants:TraesCS2B01G481900.1	EnsemblPlantsGene:TraesCS2B01G481900	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0042446	GO:GO:2000032	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12
MapMan:26.9.1.6.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:679909388..679910947

Molecular Weight (calculated)

54903.1 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.154

Length

519 amino acids

Sequence
(BLAST)

001: MKAMNYHEQE GQELAVVATS NDGLDWLDDS VSLLAGDIDL GGSYGWWCDI LPAQKDDIGS VVAQTLSPPA PPATSSPLAH PSPSIASPAA SEPSPKKRKS
101: PAHMVSGSGH SSSNNQRRRT EQDRPGGGKK GGGAGSDRDA RWAEQLLGPC AVAVEARNLS RVQHLFYVLG ELAAFSGDAN HRLAAYGLRA LSLRLPAAVG
201: PAAAAAVRVP AACESPTPSF AGAEPRLFRA SLIKFHEVSP WFTLPNTLAN AAISQLASAA PRPLHLVDIG ISHGVQWPTL LESLTRMAAG RAPPSVRLTV
301: VATPPVPFSA SPPGYDFSPH LLRYAKSIKL DLEISRAASL DPAHGLCTTP DEALVVCLQF RLGHVTAEER TDIIRRVKGL KPHLVVLSEL DVGGNGSAAG
401: EFTARLELLW RFLESTHAAF KGRDGEDRRL LEAEAGTAVA VAAAREAMGR EGWRDRMTAA GFEQVAFGGE AVESARSLLR KYDNGWEMST AAAATGGGGA
501: VALRWKGQPV SFCSLWRPA

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.