Factsheet for HORVU2Hr1G104160.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G040860.3	Barley	mitochondrion	52.85	60.43
HORVU5Hr1G097760.3	Barley	mitochondrion, plastid	79.85	55.7
HORVU5Hr1G117780.1	Barley	mitochondrion	79.85	49.3
TraesCS2A01G460200.1	Wheat	nucleus	90.11	45.93
TraesCS2D01G460500.1	Wheat	nucleus	86.69	44.19
TraesCS2B01G481900.1	Wheat	nucleus	85.93	43.55
HORVU7Hr1G060780.1	Barley	cytosol, plastid	77.95	42.62
Os03t0408600-01	Rice	nucleus	65.4	32.89
HORVU7Hr1G115720.3	Barley	mitochondrion	55.89	32.59
Zm00001d029474_P001	Maize	cytosol	65.02	32.51
OQU92409	Sorghum	cytosol	67.68	32.07
Zm00001d047266_P001	Maize	nucleus	64.64	31.78
Zm00001d048624_P001	Maize	nucleus	22.81	27.27
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.4	22.6
KRH47610	Soybean	cytosol	46.01	22.32
VIT_09s0002g01190.t01	Wine grape	nucleus	45.63	22.02
Solyc03g123400.1.1	Tomato	extracellular, nucleus	44.87	21.77
PGSC0003DMT400089692	Potato	nucleus	44.49	21.59
KRH06192	Soybean	nucleus	44.11	21.36
AT3G13840.1	Thale cress	cytosol	40.3	20.78
CDX97537	Canola	cytosol	38.4	19.84
Bra027378.1-P	Field mustard	cytosol	38.4	19.8
HORVU1Hr1G066390.1	Barley	cytosol	27.76	17.59
HORVU2Hr1G035120.1	Barley	cytosol	26.24	15.07
HORVU2Hr1G035730.4	Barley	cytosol, plastid	27.0	11.91
PGSC0003DMT400036577	Potato	cytosol	1.14	2.31
HORVU2Hr1G104170.1	Barley	cytosol	0.38	0.7

Protein Annotations

EnsemblPlants:HORVU2Hr1G104160.1	EnsemblPlantsGene:HORVU2Hr1G104160	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:SCL29/NSP1	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000B46906F
UniProt:A0A287J9V6	MapMan:15.5.12	MapMan:26.9.1.6.1	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:702209478..702210269

Molecular Weight (calculated)

27905.4 Da

IEP (calculated)

9.347

GRAVY (calculated)

-0.011

Length

263 amino acids

Sequence
(BLAST)

001: SGNQRRRTEQ DRPGGGKKGG GAGSDRDARW AEQLLGPCAV AVEARNLSRV QHLFYVLGEL AAFSGDANHR LAAYGLRALS LRLPAAVGPA AAAAVRVPAA
101: CECPTPSFAG AEPRLFRASL IKFHEVSPWF TLPNTLANAA ISQLASAAPR PLHLVDIGVS HGVQWPTLLE SLTRMAAGRA PPSVRLTVVA TPPVPFSASP
201: PGYDFSPHLL RYAKSIKLDL EIGRAASLDS AHGFCTAPDE ALVVCLQFRL GHVTAEERTD IIR

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.