Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G104170.1 | Barley | cytosol | 20.34 | 75.35 |
| Zm00001d047266_P001 | Maize | nucleus | 68.06 | 66.92 |
| OQU92409 | Sorghum | cytosol | 70.34 | 66.67 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 32.51 | 65.02 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 46.2 | 64.46 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 50.38 | 62.21 |
| Os03t0408600-01 | Rice | nucleus | 61.03 | 61.38 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 57.41 | 58.19 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 56.46 | 57.56 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 56.27 | 57.36 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 48.67 | 53.22 |
| Zm00001d022116_P001 | Maize | nucleus | 52.66 | 50.83 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 42.21 | 49.22 |
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 20.91 | 47.83 |
| PGSC0003DMT400036577 | Potato | cytosol | 10.84 | 43.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 34.6 | 40.72 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 38.59 | 37.25 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 37.07 | 35.98 |
| AT3G13840.1 | Thale cress | cytosol | 34.79 | 35.88 |
| PGSC0003DMT400089692 | Potato | nucleus | 36.12 | 35.06 |
| Zm00001d048624_P001 | Maize | nucleus | 14.64 | 35.0 |
| CDX97537 | Canola | cytosol | 33.84 | 34.97 |
| Bra027378.1-P | Field mustard | cytosol | 33.46 | 34.51 |
| KRH06192 | Soybean | nucleus | 35.55 | 34.44 |
| KRH47610 | Soybean | cytosol | 34.98 | 33.95 |
| Zm00001d006744_P001 | Maize | plastid | 23.95 | 27.63 |
| Zm00001d021998_P001 | Maize | plastid | 23.19 | 26.75 |
| Zm00001d038609_P001 | Maize | cytosol | 20.34 | 25.12 |
| Zm00001d021973_P001 | Maize | nucleus | 23.19 | 20.61 |
| Zm00001d006721_P001 | Maize | nucleus | 22.05 | 19.8 |
| Zm00001d029607_P001 | Maize | plastid | 23.38 | 19.52 |
Protein Annotations
| EntrezGene:103636180 | MapMan:15.5.12 | MapMan:26.9.1.6.1 | UniProt:A0A1D6K5G0 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| ProteinID:ONL98820.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | InterPro:SCL29/NSP1 |
| InterPro:TF_GRAS | UniParc:UPI000221AB8F | EnsemblPlantsGene:Zm00001d029474 | EnsemblPlants:Zm00001d029474_P001 | EnsemblPlants:Zm00001d029474_T001 | SEG:seg |
Description
GRAS-transcription factor 27Scarecrow-like protein 29
Coordinates
chr1:-:72302363..72303943
Molecular Weight (calculated)
54680.2 Da
IEP (calculated)
7.197
GRAVY (calculated)
-0.189
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPMSCHEQE HPELAATTTN SGFDWLEDPI SFLTADVDIA GGGYGWWSDP AAAQQDGIGS VVAQTLSPPA PLLAHTSPSI ASPVVSEPSS KKRKSPAHRA
101: SASTGSNQRR RADQDRPGAG SSSGGSKRSG SKGGGAGSDR DTRWAEQLLN PCATAVEAGN LSRVQHLFYV LGELASFSGD ANHRLAAHGL HALARMLPAA
201: VGPAAAATVR VPPCECPTPG FAGAEPRLFR ASLIKFHEVS PWFALPNALA NAAIAQAAAS GSGGRGGSEP RSLHVVDLGV SHGVQWPTLL ESLTRLPGGR
301: APPSVRLTVA GAPPAPFSAS PPGYDFSPHL LRYAKSIDLR LAISRAASLD SVHGLASSPS GEALVVCLQF RLGHAGADER TEILRKVRGL NPELVVVSEL
401: DGGGDGTAAG EFTARLELLW RFLESTSAAF KGRDGEERRL LEAEAGTSVA SEAAGAGREA WRERMVVAGF EAAAFGDEAV ESAKSLLRKY DGGWEMSASG
501: TAGAVALRWK GQPVSFCSLW RPACSG
101: SASTGSNQRR RADQDRPGAG SSSGGSKRSG SKGGGAGSDR DTRWAEQLLN PCATAVEAGN LSRVQHLFYV LGELASFSGD ANHRLAAHGL HALARMLPAA
201: VGPAAAATVR VPPCECPTPG FAGAEPRLFR ASLIKFHEVS PWFALPNALA NAAIAQAAAS GSGGRGGSEP RSLHVVDLGV SHGVQWPTLL ESLTRLPGGR
301: APPSVRLTVA GAPPAPFSAS PPGYDFSPHL LRYAKSIDLR LAISRAASLD SVHGLASSPS GEALVVCLQF RLGHAGADER TEILRKVRGL NPELVVVSEL
401: DGGGDGTAAG EFTARLELLW RFLESTSAAF KGRDGEERRL LEAEAGTSVA SEAAGAGREA WRERMVVAGF EAAAFGDEAV ESAKSLLRKY DGGWEMSASG
501: TAGAVALRWK GQPVSFCSLW RPACSG
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.