Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G040860.3 | Barley | mitochondrion | 30.91 | 29.57 |
| Zm00001d047266_P001 | Maize | nucleus | 61.82 | 25.42 |
| HORVU2Hr1G104160.1 | Barley | cytosol | 27.27 | 22.81 |
| TraesCS2B01G481900.1 | Wheat | nucleus | 48.64 | 20.62 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 47.73 | 20.35 |
| HORVU5Hr1G097760.3 | Barley | mitochondrion, plastid | 31.36 | 18.3 |
| Os03t0408600-01 | Rice | nucleus | 41.82 | 17.59 |
| OQU92409 | Sorghum | cytosol | 41.82 | 16.58 |
| HORVU5Hr1G117780.1 | Barley | mitochondrion | 29.55 | 15.26 |
| HORVU7Hr1G060780.1 | Barley | cytosol, plastid | 32.73 | 14.97 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 35.0 | 14.92 |
| Zm00001d029474_P001 | Maize | cytosol | 35.0 | 14.64 |
| Zm00001d022116_P001 | Maize | nucleus | 32.27 | 13.03 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 25.45 | 12.53 |
| Solyc03g123400.1.1 | Tomato | extracellular, nucleus | 27.27 | 11.07 |
| KRH06192 | Soybean | nucleus | 26.82 | 10.87 |
| KRH47610 | Soybean | cytosol | 26.36 | 10.7 |
| PGSC0003DMT400089692 | Potato | nucleus | 26.36 | 10.7 |
| VIT_09s0002g01190.t01 | Wine grape | nucleus | 24.55 | 9.91 |
| Zm00001d021998_P001 | Maize | plastid | 19.55 | 9.43 |
| Bra027378.1-P | Field mustard | cytosol | 20.91 | 9.02 |
| AT3G13840.1 | Thale cress | cytosol | 20.91 | 9.02 |
| CDX97537 | Canola | cytosol | 20.45 | 8.84 |
| Zm00001d038609_P001 | Maize | cytosol | 16.82 | 8.69 |
| Zm00001d006744_P001 | Maize | plastid | 17.73 | 8.55 |
| Zm00001d006721_P001 | Maize | nucleus | 21.36 | 8.02 |
| Zm00001d021973_P001 | Maize | nucleus | 20.45 | 7.6 |
| Zm00001d029607_P001 | Maize | plastid | 18.18 | 6.35 |
| HORVU7Hr1G115720.3 | Barley | mitochondrion | 12.73 | 6.21 |
| HORVU2Hr1G104170.1 | Barley | cytosol | 2.73 | 4.23 |
| PGSC0003DMT400036577 | Potato | cytosol | 1.82 | 3.08 |
Protein Annotations
| EnsemblPlants:Zm00001d048624_P001 | EnsemblPlants:Zm00001d048624_T001 | EnsemblPlantsGene:Zm00001d048624 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:SCL29/NSP1 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF40 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AQK48277.1 |
| SEG:seg | UniParc:UPI0008448C3D | UniProt:A0A1D6PN38 | MapMan:35.2 | : | : |
Description
GRAS-transcription factor 59Scarecrow-like protein 29
Coordinates
chr4:-:1538337..1539457
Molecular Weight (calculated)
23244.3 Da
IEP (calculated)
8.839
GRAVY (calculated)
-0.362
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPMSCHEQE QHAELAAATT NSGFDWLEDS VSFLTADVDA AGCRGYGWCP PLAHTSPSIA SPAVSEPLSK KRKSPAHRAS AHSGSNQRRR ADQADRPGAG
101: GGKKGGGAGS DRDTRWAEQL LNPCTTAVEA GNLTRVQHLF YVLGELTSFS GDANHRLAAH GLRALARSRL PAAVGPAAAT AVRVPPCDCP TPAFAGTEPR
201: LFRASLISVS LYVEVYSKIR
101: GGKKGGGAGS DRDTRWAEQL LNPCTTAVEA GNLTRVQHLF YVLGELTSFS GDANHRLAAH GLRALARSRL PAAVGPAAAT AVRVPPCDCP TPAFAGTEPR
201: LFRASLISVS LYVEVYSKIR
001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK
Arabidopsis Description
SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.