Factsheet for Zm00001d029607_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d006682_P001
Zm00001d007407_P006
Zm00001d009030_P002
Zm00001d021826_P001
Zm00001d021932_P001
Zm00001d031678_P003
Zm00001d039254_P001
Zm00001d052380_P001
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Zm00001d006682_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d009030_P002	AT1G03840.1	17785527
AT4G37650.1	Zm00001d021932_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d039254_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT4G37650.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT4G37650.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT4G37650.1	Zm00001d052695_P016	AT3G12280.1	22921914
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	17446396
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	17446396
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	17785527
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	17785527
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	18500650
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	18500650
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	22921914
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	22921914
AT4G37650.1	Zm00001d021826_P001	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94653	Sorghum	plastid	71.11	67.47
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	62.86	65.67
Zm00001d021973_P001	Maize	nucleus	58.41	62.16
Zm00001d006721_P001	Maize	nucleus	56.98	61.26
GSMUA_Achr8P30950_001	Banana	mitochondrion	49.37	58.68
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.25	57.14
GSMUA_Achr4P16460_001	Banana	nucleus	46.67	55.37
KRH77129	Soybean	plastid	39.05	51.68
KRH28353	Soybean	plastid	39.37	51.45
PGSC0003DMT400055239	Potato	nucleus	37.14	51.43
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	38.1	48.58
Bra010606.1-P	Field mustard	nucleus	35.87	48.29
KRH58109	Soybean	cytosol, plastid	38.1	48.1
CDY50264	Canola	nucleus, plastid	35.87	47.58
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	37.94	47.14
KRH04424	Soybean	plastid	36.67	45.92
AT4G37650.1	Thale cress	cytosol, plastid	38.1	45.2
Bra011777.1-P	Field mustard	cytosol, plastid	37.46	44.28
CDX72645	Canola	cytosol, plastid	37.3	44.17
Bra017842.1-P	Field mustard	cytosol, plastid	37.3	44.17
CDY44032	Canola	cytosol, plastid	36.35	43.62
Zm00001d038609_P001	Maize	cytosol	23.33	34.51
Zm00001d006744_P001	Maize	plastid	21.27	29.39
Zm00001d021998_P001	Maize	plastid	20.79	28.73
Zm00001d029474_P001	Maize	cytosol	19.52	23.38
Zm00001d047266_P001	Maize	nucleus	19.52	22.99
Zm00001d022116_P001	Maize	nucleus	18.25	21.1
Zm00001d048624_P001	Maize	nucleus	6.35	18.18

Protein Annotations

EntrezGene:103636850	MapMan:15.5.12	MapMan:26.3.1.4	UniProt:A0A060CVM9	ProteinID:AIB04506.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987
GO:GO:0043565	GO:GO:0048366	InterPro:IPR005202	ProteinID:ONL99088.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI00022153D4	EnsemblPlantsGene:Zm00001d029607
EnsemblPlants:Zm00001d029607_P001	EnsemblPlants:Zm00001d029607_T001	SEG:seg	:	:	:

Description

GRAS-transcription factor 58Protein SHORT-ROOT

Coordinates

chr1:+:79004272..79006164

Molecular Weight (calculated)

67550.6 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.416

Length

630 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL HQHHQQHHQQ AAAAAASSSP DQHHHHQSPY SSRSTSRSND TSTGSRSSPS SYHTHNHHYH SSHPHSHYSS ASYYYDPAGS GSGSAGYYYY
101: DHHQPPPPPP YQEECGNDHG FYMDEDFSSS SSSRSRHFQS SSRAPPSSSP TPPHAQPQPP PASTSSGAGA GALFEAADFS FPQVDIDLDF SSPASSSGAA
201: ASSSGGGGAG RWAAQLLLEC ARAVAARDSQ RVQQLMWMLN ELASPYGDVD QKLASYFLQG LFARLTTSGP RTLRTLAAAS DRNTSFDSTR RTALRFQELS
301: PWASFGHVAA NGAILESFLD AAAAAAASSS SSSQHPPRLH ILDLSNTFCT QWPTLLEALA TRSSDDTPHL SITTVVPTAG VPSSAAAQRV MREIAQRLEK
401: FARLMGVPFS FRAVHHAGDL AGLDLDGLGL GLREGGAATA LAINCVNALR GVAPGGARRR DAFVASLRRL EPRVVTVVEE DADLVAASEP SSSSAGEADA
501: EAAFMKVFTE GLRFFSAYMD SLEESFPKAS NERLALERAA GRAIVDLVAC PASESVERRE TGASWARRMR SAGFSPVAFS DDVADDMRSL LRRYREGWTL
601: REPGADDGAA AGVFLAWKEQ PVVWTSAWRP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.