Factsheet for Zm00001d021932_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d006721_P001
Zm00001d007407_P006
Zm00001d011881_P001
Zm00001d021973_P001
Zm00001d023247_P001
Zm00001d023248_P001
Zm00001d029607_P001
Zm00001d031678_P003
Zm00001d037901_P001
Zm00001d042127_P001
Zm00001d052380_P001
Zm00001d052463_P001
Zm00001d052464_P001
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Zm00001d005029_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d052380_P001	AT3G54220.1	17785527
AT1G03840.1	Zm00001d006721_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d021973_P001	AT4G37650.1	17785527
AT1G03840.1	Zm00001d029607_P001	AT4G37650.1	17785527
AT5G44160.1	Zm00001d011881_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023247_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d023248_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d037901_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d042127_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052463_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d052464_P001	AT1G50420.1	21798944
AT5G44160.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT5G44160.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT5G44160.1	Zm00001d052695_P016	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97442	Sorghum	nucleus	82.21	85.46
Zm00001d006682_P001	Maize	nucleus	76.07	83.56
CDY14910	Canola	nucleus	11.41	69.92
Os07t0581366-00	Rice	cytosol, nucleus	53.99	69.4
Bra036013.1-P	Field mustard	nucleus	12.64	65.19
CDY72283	Canola	nucleus	14.6	62.96
TraesCS2B01G218900.1	Wheat	nucleus	59.88	60.85
TraesCS2A01G188400.2	Wheat	nucleus	59.88	58.8
TraesCS2D01G199300.3	Wheat	nucleus	59.88	57.75
HORVU2Hr1G036710.3	Barley	nucleus	55.09	51.73
Zm00001d039254_P001	Maize	nucleus	20.0	46.05
VIT_12s0028g03030.t01	Wine grape	nucleus	22.21	42.39
Zm00001d028139_P001	Maize	nucleus	27.24	41.19
Zm00001d009030_P002	Maize	nucleus	21.72	39.6
AT5G44160.1	Thale cress	nucleus	22.21	38.84
CDY22307	Canola	nucleus	21.84	38.36
Bra033724.1-P	Field mustard	nucleus	21.84	38.36
KRH22332	Soybean	nucleus	22.21	38.19
CDX94759	Canola	nucleus	21.72	38.15
KRH25657	Soybean	nucleus	21.96	38.0
KRH49655	Soybean	nucleus	16.81	37.85
KRH26995	Soybean	nucleus	22.21	37.71
KRH55868	Soybean	nucleus	21.84	37.55
Zm00001d008842_P001	Maize	nucleus	20.98	36.62
Zm00001d032922_P001	Maize	nucleus	19.39	36.24
CDY18188	Canola	nucleus	21.23	36.12
Bra032541.1-P	Field mustard	nucleus	21.6	35.92
CDY32514	Canola	nucleus	21.6	35.92
Bra015271.1-P	Field mustard	nucleus	21.23	35.89
CDX89862	Canola	nucleus	21.1	35.83
Zm00001d039467_P001	Maize	nucleus	21.84	35.81
AT1G03840.1	Thale cress	nucleus	22.09	35.57
Zm00001d011223_P002	Maize	nucleus	20.0	34.83
PGSC0003DMT400024272	Potato	nucleus	20.74	34.14
Solyc07g053570.2.1	Tomato	nucleus	20.98	34.06
Zm00001d044261_P001	Maize	nucleus	19.63	33.33
Zm00001d021403_P001	Maize	nucleus	19.39	32.64
Zm00001d042202_P001	Maize	nucleus	20.98	32.57
Zm00001d016632_P001	Maize	nucleus	20.0	32.09
Zm00001d017560_P001	Maize	nucleus	22.21	31.1
Zm00001d026113_P006	Maize	nucleus	21.96	29.88
Zm00001d006319_P001	Maize	nucleus	20.0	29.16
Zm00001d031992_P001	Maize	nucleus	21.47	28.93
Zm00001d047976_P001	Maize	nucleus, plastid	15.83	28.79
Zm00001d002654_P003	Maize	nucleus	22.21	28.59
Zm00001d028361_P001	Maize	nucleus, plastid	15.58	28.1
Zm00001d005871_P002	Maize	nucleus	14.97	27.66
Zm00001d020683_P001	Maize	nucleus	15.34	25.15
Zm00001d031759_P001	Maize	nucleus	15.71	24.71

Protein Annotations

EnsemblPlants:Zm00001d021932_P001	EnsemblPlants:Zm00001d021932_T001	EnsemblPlantsGene:Zm00001d021932	EntrezGene:103633352	Gene3D:3.30.160.60	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF29	PFscan:PS50157	ProteinID:ONM59085.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000220C092	UniProt:A0A1D6IHW9	MapMan:15.5.15	:	:

Description

Protein indeterminate-domain 11

Coordinates

chr7:+:166087668..166091092

Molecular Weight (calculated)

90021.5 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.914

Length

815 amino acids

Sequence
(BLAST)

001: MPPPHPTDAE AGPEQVAPTE AVPLAAAAPA PVKKKRNLPG TPDPDAEVIA LSPGTLLATN RFVCEVCGKG FQRDQNLQLH RRGHNLPWRL RQRGPGAAPP
101: RRRVYVCPEP GCVHHSPTRA LGDLTGIKKH FCRKHGEKRW ACPRCGKRYA VQADLKAHAK TCGTREYRCD CGTLFTRRDS FVTHRAFCGA LGEETGRALA
201: PPAPPSPRPP DLEAEENVDN DKEEEENEDS ALAEVEVPQR VEVAVPEEPE PEPQRIPSPP PLPQEPPCRP SPPPLPQEQP RRVSPPPLPK EPPCHHPTPP
301: PLPKEPQRLP FPPEQQAVVA LVPNVDEPEV AAVGTVAAKL EDETDQDETT CFQEADQYKD AELEVSNLLD KDTPMLPCFL PSPSEAIGTD GSSTTCGAGG
401: SVSNSIVPST TTNTFAGLFA SATTSTTSQS RSLRDLIGVD PTFLCLAIGA PSLFPQTSAS NSGTFAPPPA PHMSATALLQ KATEAGATQS SSSFLKEFGL
501: ASSSSSPRPK QQQPHGRVAE TSTDPWQYRN SNQQMEMERH QSHQRREMES SSQPWQHPRI TQQMEMERHH QRSHQQREME SSSQPWQHPR STQQMEMERH
601: HQRSHQQREM ESSSQPWQHP RSTQQMEMER HHQRNHRQRE TESSSQQWHH HHHHPNDQMM GLESYRSNQQ MEMDPSSQQR WAQHQRSNQQ QQMEMMERHH
701: LSNQQIRSTQ QMERRAMVSG GGLGLGLAYE SGNPGLPLPD LMTGPSPLLG PKPATLDFLG LGIGGTMGGS TASRGLPALM VGRELDMGPS AQVPPAAAAA
801: PWEDAKRKTN GRTIL

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.