Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38489 | Sorghum | nucleus | 86.7 | 88.32 |
| KRH67268 | Soybean | nucleus | 33.72 | 56.32 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 44.27 | 47.19 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 44.04 | 47.06 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 34.86 | 46.63 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 44.04 | 45.93 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 38.07 | 43.12 |
| Zm00001d039254_P001 | Maize | nucleus | 33.72 | 41.53 |
| Os10t0419200-01 | Rice | nucleus | 42.2 | 38.74 |
| CDX97281 | Canola | nucleus, plastid | 33.95 | 38.44 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 34.63 | 37.38 |
| Bra018535.1-P | Field mustard | plastid | 34.17 | 36.88 |
| Zm00001d009030_P002 | Maize | nucleus | 37.61 | 36.69 |
| CDX91304 | Canola | nucleus, plastid | 33.95 | 36.63 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 36.93 | 36.34 |
| KRG95590 | Soybean | nucleus | 38.07 | 36.09 |
| KRH71370 | Soybean | nucleus | 36.7 | 34.93 |
| KRH32064 | Soybean | nucleus | 36.47 | 34.34 |
| Zm00001d008842_P001 | Maize | nucleus | 36.47 | 34.05 |
| Zm00001d039467_P001 | Maize | nucleus | 38.53 | 33.8 |
| Zm00001d011223_P002 | Maize | nucleus | 35.78 | 33.33 |
| PGSC0003DMT400049788 | Potato | nucleus | 35.78 | 32.7 |
| Solyc09g065670.2.1 | Tomato | nucleus | 35.09 | 32.55 |
| Zm00001d044261_P001 | Maize | nucleus | 35.78 | 32.5 |
| Zm00001d021403_P001 | Maize | nucleus | 33.95 | 30.58 |
| Zm00001d016632_P001 | Maize | nucleus | 35.09 | 30.12 |
| Zm00001d042202_P001 | Maize | nucleus | 35.09 | 29.14 |
| Zm00001d028139_P001 | Maize | nucleus | 36.01 | 29.13 |
| Zm00001d017560_P001 | Maize | nucleus | 35.55 | 26.63 |
| Zm00001d026113_P006 | Maize | nucleus | 36.24 | 26.38 |
| Zm00001d002654_P003 | Maize | nucleus | 37.16 | 25.59 |
| Zm00001d031992_P001 | Maize | nucleus | 35.09 | 25.29 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 25.92 | 25.22 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 25.92 | 25.0 |
| Zm00001d005871_P002 | Maize | nucleus | 25.23 | 24.94 |
| Zm00001d006319_P001 | Maize | nucleus | 31.19 | 24.33 |
| Zm00001d020683_P001 | Maize | nucleus | 25.46 | 22.33 |
| CDY67587 | Canola | cytosol, nucleus | 11.01 | 21.33 |
| Zm00001d031759_P001 | Maize | nucleus | 25.23 | 21.24 |
| Zm00001d006682_P001 | Maize | nucleus | 35.78 | 21.02 |
| Zm00001d021932_P001 | Maize | nucleus | 36.24 | 19.39 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:541693 | EMBL:AF058757 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | UniProt:O65215 | ProteinID:ONM06338.1 | PFAM:PF12874 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF46 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00000ACD14 |
| EnsemblPlantsGene:Zm00001d032922 | EnsemblPlants:Zm00001d032922_P001 | EnsemblPlants:Zm00001d032922_T001 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
indeterminate growth1Zinc finger protein ID1
Coordinates
chr1:-:243201405..243204865
Molecular Weight (calculated)
46749.3 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.406
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMMMLSDLS SDDHEATGSS SYGGDMASYA LSPLFLAPAA SATAPLPPPP QPPAEELTNK QAAGGGKRKR SQPGNPDPGA EVIALSPRTL VATNRFVCEI
101: CNKGFQRDQN LQLHRRGHNL PWKLRQRSSL VVPSSSAAAG SGGRQQQQQG EAAPTPPRKR VYVCPEPTCV HHDPARALGD LTGIKKHFSR KHGEKRWCCE
201: RCGKRYAVQS DWKAHVKGCG TREYRCDCGI LFSRKDSLLT HRAFCDALAE ESARLLAAAA NNGSTITTTS SSNNNDLLNA SNNITPLFLP FASSPPPVVV
301: AAAQNPNNTL FFLHQELSPF LQPRVTMQQQ PSPYLDLHMH VDASIVTTTG GLADGTPVSF GLALDGSVAT VGHRRLTRDF LGVDGGGRQV EELQLPLCAT
401: AAAAGASRTA SCATDLTRQC LGGRLPPVNE TWSHNF
101: CNKGFQRDQN LQLHRRGHNL PWKLRQRSSL VVPSSSAAAG SGGRQQQQQG EAAPTPPRKR VYVCPEPTCV HHDPARALGD LTGIKKHFSR KHGEKRWCCE
201: RCGKRYAVQS DWKAHVKGCG TREYRCDCGI LFSRKDSLLT HRAFCDALAE ESARLLAAAA NNGSTITTTS SSNNNDLLNA SNNITPLFLP FASSPPPVVV
301: AAAQNPNNTL FFLHQELSPF LQPRVTMQQQ PSPYLDLHMH VDASIVTTTG GLADGTPVSF GLALDGSVAT VGHRRLTRDF LGVDGGGRQV EELQLPLCAT
401: AAAAGASRTA SCATDLTRQC LGGRLPPVNE TWSHNF
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.