Factsheet for Zm00001d016632_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30322	Sorghum	nucleus	84.45	90.32
EES05153	Sorghum	nucleus	85.43	88.39
Os02t0518500-00	Rice	nucleus	81.69	84.35
TraesCS4D01G294900.1	Wheat	nucleus	79.53	83.47
TraesCS4A01G008900.1	Wheat	nucleus	79.33	83.09
TraesCS4B01G296200.1	Wheat	nucleus	78.94	82.85
TraesCS2D01G287500.1	Wheat	nucleus	63.78	70.28
TraesCS2A01G289500.1	Wheat	nucleus	64.76	68.12
TraesCS2B01G306100.1	Wheat	nucleus	64.17	67.49
Zm00001d039254_P001	Maize	nucleus	30.91	44.35
VIT_09s0054g01820.t01	Wine grape	nucleus	29.92	38.58
Zm00001d008842_P001	Maize	nucleus	33.66	36.62
Zm00001d009030_P002	Maize	nucleus	31.89	36.24
Zm00001d039467_P001	Maize	nucleus	35.24	36.02
Zm00001d032922_P001	Maize	nucleus	30.12	35.09
Zm00001d011223_P002	Maize	nucleus	31.89	34.62
Zm00001d044261_P001	Maize	nucleus	31.89	33.75
Zm00001d021403_P001	Maize	nucleus	30.91	32.44
Zm00001d028139_P001	Maize	nucleus	33.46	31.54
Zm00001d042202_P001	Maize	nucleus	31.1	30.1
Zm00001d017560_P001	Maize	nucleus	34.25	29.9
Zm00001d026113_P006	Maize	nucleus	34.84	29.55
Zm00001d031992_P001	Maize	nucleus	33.27	27.93
Zm00001d002654_P003	Maize	nucleus	34.65	27.8
Zm00001d006319_P001	Maize	nucleus	29.92	27.19
Zm00001d005871_P002	Maize	nucleus	22.24	25.62
Zm00001d047976_P001	Maize	nucleus, plastid	21.65	24.55
Zm00001d028361_P001	Maize	nucleus, plastid	21.46	24.11
Zm00001d020683_P001	Maize	nucleus	22.24	22.74
Zm00001d006682_P001	Maize	nucleus	32.48	22.24
Zm00001d031759_P001	Maize	nucleus	22.44	22.01
Zm00001d021932_P001	Maize	nucleus	32.09	20.0

Protein Annotations

EntrezGene:103628667	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A1D6H9C8	ProteinID:AQK71317.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF48	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002208CA5	EnsemblPlantsGene:Zm00001d016632	EnsemblPlants:Zm00001d016632_P001
EnsemblPlants:Zm00001d016632_T001	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

Protein indeterminate-domain 5 chloroplastic

Coordinates

chr5:+:170762945..170765323

Molecular Weight (calculated)

55141.6 Da

IEP (calculated)

7.812

GRAVY (calculated)

-0.573

Length

508 amino acids

Sequence
(BLAST)

001: MSSHTSEEES LSSFQQQQAK LEACHAAGSS KADAAAAAMP VVKKRRGHPG TLDPDVEVVA LSPKTLLATN RYICEVCHKG FQRDQNLQLH RRGHNLPWKL
101: KQRSSTEAKK KVYVCPEATC PHHDASRALG DLTGIKKHYS RKHGEKKWKC DRCSKKYAVQ SDWKAHTKIC GTKEYRCDCG TIFSRKDSFI THRAFCDALA
201: EDTSRVNHSL ATMVGSLHGH QQDIFSHGVP TFPTSPPDVM ANLSSINDHN SDSHLRSLSP YALITRNTAL FSNQISPKDP GGFPLDGSAS SYPYMSMTSP
301: YMSATALLQK AAEMGAKTSQ DPISPLLLKS FPSNVTTPSP RDHHMDISSG SQGDSLGNSA ANSVVVGIKA AEDEGSYLSG RGSILMSSPW VNTYRPATVP
401: LIGLMNHPFG MSRAEKESSA GMFPGGQTQH SRQENISGPV GDAGLTQDFL GLGGSGNLEM GSADTYNADV SVTALSYSDE QQKPQDHIYP YHQSSLDSTA
501: LEKPIWES

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.